RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 FGF14Q92915 247 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 ACO2Q99798 780 aaKnown RBP12.47□□□□□ -0.41
VPS28-214ENST00000531032 CDT1Q9H211 546 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 TMEM134Q9H6X4 195 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 GOLGA2P5Q9HBQ8 144 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 ARHGEF3Q9NR81 526 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 TOPORSQ9NS56 1045 aaPredicted RBP12.47□□□□□ -0.41
VPS28-214ENST00000531032 ARHGAP28Q9P2N2 729 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 PCDHB6Q9Y5E3 794 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 BACE2Q9Y5Z0 518 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 NOTCH4Q99466 2003 aa12.47□□□□□ -0.41
VPS28-214ENST00000531032 PTPRZ1P23471 2315 aaPredicted RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 CCDC169A6NNP5 214 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 PP2D1A8MPX8 630 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 E9PMD0 336 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 STK25O00506 426 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 ABLIM1O14639 778 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 TRAPPC3O43617 180 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 HIP1RO75146 1068 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 RFX1P22670 979 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 PROZP22891 400 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 TKTP29401 623 aaKnown RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 PRPHP41219 470 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 YARSP54577 528 aaKnown RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 PEX3P56589 373 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 SOX4Q06945 474 aaPredicted RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 MAPK7Q13164 816 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 IL17AQ16552 155 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 ZNF568Q3ZCX4 644 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 AXDND1Q5T1B0 1012 aaPredicted RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 KRT79Q5XKE5 535 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 PARM1Q6UWI2 310 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 RSPO2Q6UXX9 243 aaPredicted RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 ANKS3Q6ZW76 656 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 TAS1R3Q7RTX0 852 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 ITFG1Q8TB96 612 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 DDX27Q96GQ7 796 aaKnown RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 DRC1Q96MC2 740 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 RPP25Q9BUL9 199 aaKnown RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 RUSC1Q9BVN2 902 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 CCDC94Q9BW85 323 aaPredicted RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 MRPL4Q9BYD3 311 aaKnown RBP12.46□□□□□ -0.41
VPS28-214ENST00000531032 C17orf75Q9HAS0 396 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 DLGAP2Q9P1A6 1054 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 DNM3Q9UQ16 869 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 CDY1Q9Y6F8 540 aa12.46□□□□□ -0.41
VPS28-214ENST00000531032 BRCC3P46736 316 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 STARD6P59095 220 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 GPC5P78333 572 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 SLC8B1Q6J4K2 584 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 RINT1Q6NUQ1 792 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 C1orf186Q6ZWK4 172 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 MTSS1LQ765P7 747 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 KCNK18Q7Z418 384 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 ST13P5Q8NFI4 369 aaPredicted RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 SNX27Q96L92 541 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 ZMAT2Q96NC0 199 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 NTPCRQ9BSD7 190 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 MMTAG2Q9BU76 263 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 TARS2Q9BW92 718 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 SLC38A7Q9NVC3 462 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 HCFC1R1Q9NWW0 138 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 DNMT3BQ9UBC3 853 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 KCNH3Q9ULD8 1083 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 POLIQ9UNA4 740 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 SIT1Q9Y3P8 196 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 RBM19Q9Y4C8 960 aaKnown RBP12.45□□□□□ -0.42
VPS28-214ENST00000531032 CITO14578 2027 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 GVINP1Q7Z2Y8 2422 aa12.45□□□□□ -0.42
VPS28-214ENST00000531032 SPTBN4Q9H254 2564 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 I3L4J1 428 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 DCNP07585 359 aaKnown RBP12.44□□□□□ -0.42
VPS28-214ENST00000531032 MCF2P10911 925 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 KCNE1P15382 129 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 GUCY2CP25092 1073 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 CDC25AP30304 524 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 OSTNP61366 133 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 PABPC1LQ4VXU2 614 aaKnown RBP12.44□□□□□ -0.42
VPS28-214ENST00000531032 HYIQ5T013 277 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 MPZL3Q6UWV2 235 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 DTHD1Q6ZMT9 781 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 NPAS3Q8IXF0 933 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 PJA1Q8NG27 643 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 ZNF461Q8TAF7 563 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 TIPINQ9BVW5 301 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 KMT5AQ9NQR1 393 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 CNTN3Q9P232 1028 aa12.44□□□□□ -0.42
VPS28-214ENST00000531032 PDCD11Q14690 1871 aaKnown RBP12.44□□□□□ -0.42
VPS28-214ENST00000531032 ARHGEF37A1IGU5 675 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 PODXLO00592 558 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 SYN3O14994 580 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 MEFVO15553 781 aaPredicted RBP12.43□□□□□ -0.42
VPS28-214ENST00000531032 TBC1D4O60343 1298 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 ABLIM3O94929 683 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 ATP2C1P98194 919 aaPredicted RBP12.43□□□□□ -0.42
VPS28-214ENST00000531032 ROR1Q01973 937 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 SPECC1Q5M775 1068 aa12.43□□□□□ -0.42
VPS28-214ENST00000531032 VARS2Q5ST30 1063 aaKnown RBP12.43□□□□□ -0.42
VPS28-214ENST00000531032 ADSSL1Q8N142 457 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms