RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 GOLGA6L3A6NEY3 463 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 C1QTNF9BB2RNN3 333 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 TRAF5O00463 557 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 NOP56O00567 594 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 EDIL3O43854 480 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 OPA1O60313 960 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 BRINP1O60477 761 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CCNT1O60563 726 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 KPNA6O60684 536 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PLA2G6O60733 806 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 KINO60870 393 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 EFCAB14O75071 495 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CAND2O75155 1236 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PPM1BO75688 479 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 FLOT1O75955 427 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 TDP2O95551 362 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PROCP04070 461 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 SPATA31C1P0DKV0 1188 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CMA1P23946 247 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 HOXA13P31271 388 aaPredicted RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 SYKP43405 635 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 IREB2P48200 963 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 TRAPPC10P48553 1259 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 MRPL12P52815 198 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 ATP2C1P98194 919 aaPredicted RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 ITKQ08881 620 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 BIRC2Q13490 618 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 KCTD2Q14681 263 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 GRIK4Q16099 956 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 IL17AQ16552 155 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 LETM2Q2VYF4 491 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 EXOSC6Q5RKV6 272 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 PRAMEF13Q5VWM6 474 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 ZNF280DQ6N043 979 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 GPAT2Q6NUI2 795 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 USP49Q70CQ1 688 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 ADAT2Q7Z6V5 191 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 NEK8Q86SG6 692 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 FAM160B2Q86V87 743 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 SPATS2Q86XZ4 545 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 C7orf61Q8IZ16 206 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CHPFQ8IZ52 775 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 FMR1NBQ8N0W7 255 aaPredicted RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 CPXCR1Q8N123 301 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 MYO1HQ8N1T3 1032 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 ARHGEF39Q8N4T4 335 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PDILTQ8N807 584 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 C4orf32Q8N8J7 132 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 TBCKQ8TEA7 893 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PPP1R13LQ8WUF5 828 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 BTN2A2Q8WVV5 523 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 TBC1D5Q92609 795 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 SLC39A13Q96H72 371 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 WNK4Q96J92 1243 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 P2RX7Q99572 595 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 SMAD5Q99717 465 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 AMNQ9BXJ7 453 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 ANO3Q9BYT9 981 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 PANK2Q9BZ23 570 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CDH19Q9H159 772 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CSRNP2Q9H175 543 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 TNMDQ9H2S6 317 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 RANBP17Q9H2T7 1088 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 TSPY26PQ9H489 355 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 RPAP3Q9H6T3 665 aaPredicted RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 RAD18Q9NS91 495 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 DDX19AQ9NUU7 478 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 FEZ2Q9UHY8 353 aaPredicted RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 AKT3Q9Y243 479 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 SRPRBQ9Y5M8 271 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 RPS6KL1Q9Y6S9 549 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 ZHX2Q9Y6X8 837 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 CHD8Q9HCK8 2581 aa4.65□□□□□ -1.67
CD44-226ENST00000527889 RANBP2P49792 3224 aaKnown RBP4.65□□□□□ -1.67
CD44-226ENST00000527889 TCRBV16S1A1N1A0A5B0 115 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 BLACEA4D250 179 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 PP2D1A8MPX8 630 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 MEIS2O14770 477 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 POLR2DO15514 142 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 SLC37A4O43826 429 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ZNF500O60304 480 aaPredicted RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 NEMFO60524 1076 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 PEX10O60683 326 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ZNF202O95125 648 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 BMP15O95972 392 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 CFBP00751 764 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 OR52Z1P0C646 297 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 JMJD7P0C870 316 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 ALAS1P13196 640 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 BPIP17213 487 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 CD68P34810 354 aaPredicted RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 NF2P35240 595 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 IGFALSP35858 605 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 USP14P54578 494 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 GFRA1P56159 465 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 UBXN2AP68543 259 aa4.64□□□□□ -1.67
CD44-226ENST00000527889 IRX3P78415 501 aaPredicted RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 PIN1Q13526 163 aaPredicted RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 AUHQ13825 339 aaKnown RBP4.64□□□□□ -1.67
CD44-226ENST00000527889 TTLL4Q14679 1199 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms