RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM26DQ5JW98 314 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 FBXO46Q6PJ61 603 aaPredicted RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 TRAPPC11Q7Z392 1133 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 PPM1KQ8N3J5 372 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 CCDC42Q96M95 316 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 MTMR12Q9C0I1 747 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 ARHGAP20Q9P2F6 1191 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 ST3GAL5Q9UNP4 418 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 PPP2R2CQ9Y2T4 447 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 EPN1Q9Y6I3 576 aaPredicted RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 F8VZ95 297 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 SOX5P35711 763 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 YARSP54577 528 aaKnown RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 ARID5AQ03989 594 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 KLHL30Q0D2K2 578 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 NFX1Q12986 1120 aaKnown RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 ARHGAP44Q17R89 818 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 TDRD12Q587J7 1177 aaKnown RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 GPIHBP1Q8IV16 184 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 EFCAB13Q8IY85 973 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 FAM81BQ96LP2 452 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 PLEKHA5Q9HAU0 1116 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.68■■□□□ 1.221e-6■■■■■ 37.9
VPS28-208ENST00000527797 CHST12Q9NRB3 414 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 C1orf112Q9NSG2 853 aa22.68■■□□□ 1.22
VPS28-208ENST00000527797 BZW2Q9Y6E2 419 aaKnown RBP22.68■■□□□ 1.22
VPS28-208ENST00000527797 SSU72P8A0A1W2PR75 194 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 MEFVO15553 781 aaPredicted RBP22.67■■□□□ 1.22
VPS28-208ENST00000527797 NDUFA10O95299 355 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 PLEKP08567 350 aaPredicted RBP22.67■■□□□ 1.22
VPS28-208ENST00000527797 CCDC175P0C221 793 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 FERP16591 822 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 EIF4A3P38919 411 aaKnown RBP22.67■■□□□ 1.22
VPS28-208ENST00000527797 NCOA4Q13772 614 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 UBXN11Q5T124 520 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 HGSNATQ68CP4 663 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 HELQQ8TDG4 1101 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 DESI2Q9BSY9 194 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 PI4K2AQ9BTU6 479 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 DEF6Q9H4E7 631 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 RRAGDQ9NQL2 400 aaPredicted RBP22.67■■□□□ 1.22
VPS28-208ENST00000527797 SNTG2Q9NY99 539 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 ADGRG1Q9Y653 693 aa22.67■■□□□ 1.22
VPS28-208ENST00000527797 FRMPD3Q5JV73 1810 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 USP27XA6NNY8 438 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 NFICP08651 508 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 CCDC172P0C7W6 258 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 CDK7P50613 346 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 MAPK8IP2Q13387 824 aaPredicted RBP22.66■■□□□ 1.22
VPS28-208ENST00000527797 TRPC3Q13507 836 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 FBXO47Q5MNV8 452 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 ZNF618Q5T7W0 954 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 TWF2Q6IBS0 349 aaKnown RBP22.66■■□□□ 1.22
VPS28-208ENST00000527797 JADE1Q6IE81 842 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 IRF2BP2Q7Z5L9 587 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 TATDN2Q93075 761 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 IMPG2Q9BZV3 1241 aa22.66■■□□□ 1.22
VPS28-208ENST00000527797 GFPT2O94808 682 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 GCNT1Q02742 428 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 PKN2Q16513 984 aaKnown RBP22.65■■□□□ 1.22
VPS28-208ENST00000527797 ENOSF1Q7L5Y1 443 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 NT5DC4Q86YG4 428 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 GPR88Q9GZN0 384 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 C2CD2Q9Y426 696 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 SQORQ9Y6N5 450 aa22.65■■□□□ 1.22
VPS28-208ENST00000527797 FOXN3O00409 490 aaPredicted RBP22.64■■□□□ 1.22
VPS28-208ENST00000527797 AKR1B10O60218 316 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 IPO7O95373 1038 aaKnown RBP22.64■■□□□ 1.22
VPS28-208ENST00000527797 CKBP12277 381 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 PRKCIP41743 596 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 LBX1P52954 281 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 TMEM132DQ14C87 1099 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 USP38Q8NB14 1042 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 ZNF333Q96JL9 665 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 PPP1R13BQ96KQ4 1090 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 NXF3Q9H4D5 531 aaKnown RBP22.64■■□□□ 1.22
VPS28-208ENST00000527797 HAUS4Q9H6D7 363 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 AGO3Q9H9G7 860 aaKnown RBP22.64■■□□□ 1.22
VPS28-208ENST00000527797 ERVK-5Q9HDB9 667 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 HES2Q9Y543 173 aa22.64■■□□□ 1.22
VPS28-208ENST00000527797 EIF3CLB5ME19 914 aaKnown RBP22.64■■□□□ 1.21
VPS28-208ENST00000527797 CST3P01034 146 aaPredicted RBP22.64■■□□□ 1.21
VPS28-208ENST00000527797 GHRP10912 638 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 ZSCAN20P17040 1043 aaPredicted RBP22.64■■□□□ 1.21
VPS28-208ENST00000527797 KRT83P78385 493 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 PAK2Q13177 524 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 SGSM1Q2NKQ1 1148 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 ACRBPQ8NEB7 543 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 KAT5Q92993 513 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 SNX27Q96L92 541 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 KREMEN1Q96MU8 473 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 EIF3CQ99613 913 aaKnown RBP22.64■■□□□ 1.21
VPS28-208ENST00000527797 DERAQ9Y315 318 aa22.64■■□□□ 1.21
VPS28-208ENST00000527797 CLSTN1O94985 981 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 SGPL1O95470 568 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 TFRCP02786 760 aaKnown RBP22.63■■□□□ 1.21
VPS28-208ENST00000527797 PNMA6AP0CW24 399 aaPredicted RBP22.63■■□□□ 1.21
VPS28-208ENST00000527797 KIF11P52732 1056 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 LPIN1Q14693 890 aa22.63■■□□□ 1.21
VPS28-208ENST00000527797 SPA17Q15506 151 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms