RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-223ENST00000526553 TMX3Q96JJ7 454 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 TMPRSS5Q9H3S3 457 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 MMRN2Q9H8L6 949 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 TCF7L1Q9HCS4 588 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 SLC2A4RGQ9NR83 387 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 FZD1Q9UP38 647 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 PCDHA13Q9Y5I0 950 aa6.19□□□□□ -1.42
CD44-223ENST00000526553 RNASET2O00584 256 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 RPLP2P05387 115 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 ITGB1P05556 798 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 IL10RAQ13651 578 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 LRRC55Q6ZSA7 311 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 RSPH3Q86UC2 560 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 RHOT2Q8IXI1 618 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 SYNE4Q8N205 404 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 SLC16A11Q8NCK7 471 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 IFI44Q8TCB0 444 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 HAS1Q92839 578 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 MRGPRX4Q96LA9 322 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 NEU1Q99519 415 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 MYOCQ99972 504 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 C11orf54Q9H0W9 315 aaPredicted RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 ZNF768Q9H5H4 540 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 NRDE2Q9H7Z3 1164 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 SRRDQ9UH36 339 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 RUVBL1Q9Y265 456 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 LUC7L2Q9Y383 392 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 REXO2Q9Y3B8 237 aaKnown RBP6.18□□□□□ -1.42
CD44-223ENST00000526553 HS3ST3A1Q9Y663 406 aa6.18□□□□□ -1.42
CD44-223ENST00000526553 RPS6KA4O75676 772 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 ALDH1L1O75891 902 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 FSHBP01225 129 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 ADH4P08319 380 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 LAG3P18627 525 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 VCAM1P19320 739 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 ZFP36P26651 326 aaKnown RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 FAM189BP81408 668 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 UBXN2BQ14CS0 331 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 PDCD4Q53EL6 469 aaKnown RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 MED25Q71SY5 747 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 MRGPREQ86SM8 312 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 AMER2Q8N7J2 671 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 DCBLD1Q8N8Z6 715 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 NSUN6Q8TEA1 469 aaKnown RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 KAT5Q92993 513 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 MYEOVQ96EZ4 313 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 NUP88Q99567 741 aaPredicted RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 REXO4Q9GZR2 422 aaKnown RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 SCAND2PQ9GZW5 306 aaPredicted RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 FBXO34Q9NWN3 711 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 CALCOCO1Q9P1Z2 691 aa6.17□□□□□ -1.42
CD44-223ENST00000526553 USP15Q9Y4E8 981 aaPredicted RBP6.17□□□□□ -1.42
CD44-223ENST00000526553 ZNF185O15231 689 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 DTNBO60941 627 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 GCSHP23434 173 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 CREMQ03060 361 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 TLE1Q04724 770 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 TTF1Q15361 905 aaPredicted RBP6.16□□□□□ -1.42
CD44-223ENST00000526553 BEAN1Q3B7T3 259 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 TTC7BQ86TV6 843 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 NLGN4YQ8NFZ3 816 aaPredicted RBP6.16□□□□□ -1.42
CD44-223ENST00000526553 OR56A1Q8NGH5 318 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 RAB24Q969Q5 203 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 CLIP3Q96DZ5 547 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 HOOK2Q96ED9 719 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 HSPBAP1Q96EW2 488 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 KRTAP4-2Q9BYR5 136 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 AKIP1Q9NQ31 210 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 AASDHPPTQ9NRN7 309 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 ATP11BQ9Y2G3 1177 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 PCDHB1Q9Y5F3 818 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 HS3ST4Q9Y661 456 aa6.16□□□□□ -1.42
CD44-223ENST00000526553 E2F8A0AVK6 867 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 MARCH11A6NNE9 402 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 AKAP8O43823 692 aaKnown RBP6.15□□□□□ -1.42
CD44-223ENST00000526553 NCR1O76036 304 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 ABLIM3O94929 683 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 BMPR1AP36894 532 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 MCL1Q07820 350 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 PABPC1LQ4VXU2 614 aaKnown RBP6.15□□□□□ -1.42
CD44-223ENST00000526553 TIGD2Q4W5G0 525 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 UBE3BQ7Z3V4 1068 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 ZFPM1Q8IX07 1006 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 PRR18Q8N4B5 295 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 CLPTM1LQ96KA5 538 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 PHACTR3Q96KR7 559 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 PUS7Q96PZ0 661 aaKnown RBP6.15□□□□□ -1.42
CD44-223ENST00000526553 DMRTA2Q96SC8 542 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 TEX101Q9BY14 249 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 PCED1AQ9H1Q7 454 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 KLHL11Q9NVR0 708 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 FPGT-TNNI3KV9GXZ4 949 aa6.15□□□□□ -1.42
CD44-223ENST00000526553 TCRBV7S2A1N4TA0A589 114 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 TMEM200CA6NKL6 621 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 HAUS5O94927 633 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 IL33O95760 270 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 HLA-DOAP06340 250 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 MTHFD1P11586 935 aaKnown RBP6.14□□□□□ -1.43
CD44-223ENST00000526553 SLC6A2P23975 617 aa6.14□□□□□ -1.43
CD44-223ENST00000526553 AKAP5P24588 427 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms