RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 RPS6KC1Q96S38 1066 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 KIFC3Q9BVG8 833 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 RNF39Q9H2S5 420 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 KBTBD4Q9NVX7 518 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 DPP7Q9UHL4 492 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 HPSEQ9Y251 543 aa11.11□□□□□ -0.63
VPS28-204ENST00000526054 MYO15AQ9UKN7 3530 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 DMDP11532 3685 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 MYMKA6NI61 221 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 SFI1A8K8P3 1242 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 K7ENM7 598 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 K7ERI5 159 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 SLC16A4O15374 487 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 TEX28O15482 410 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 B4GALT5O43286 388 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 GFRA3O60609 400 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 NPTXRO95502 500 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 SLFN14P0C7P3 912 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 IDEP14735 1019 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 GAP43P17677 238 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 ABCD1P33897 745 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 NDUFA8P51970 172 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 STRN3Q13033 797 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 PRPF4BQ13523 1007 aaKnown RBP11.1□□□□□ -0.63
VPS28-204ENST00000526054 AMHR2Q16671 573 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 ASTLQ6HA08 431 aaPredicted RBP11.1□□□□□ -0.63
VPS28-204ENST00000526054 SLC27A1Q6PCB7 646 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 CCDC65Q8IXS2 484 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 RNF168Q8IYW5 571 aaPredicted RBP11.1□□□□□ -0.63
VPS28-204ENST00000526054 CCDC113Q9H0I3 377 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 FZD8Q9H461 694 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 TMEM134Q9H6X4 195 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 ARHGAP28Q9P2N2 729 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 SEL1LQ9UBV2 794 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 GIT1Q9Y2X7 761 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 VPS13AQ96RL7 3174 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 ZMYM2Q9UBW7 1377 aa11.1□□□□□ -0.63
VPS28-204ENST00000526054 CLUHO75153 1309 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 MTCL1Q9Y4B5 1905 aaKnown RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 F8W810 466 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 ACKR2O00590 384 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 ACTN4O43707 911 aaKnown RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 TRAK2O60296 914 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 MYBP10242 640 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 AKAP5P24588 427 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 NCKAP1LP55160 1127 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 ASIC1P78348 528 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 DSG1Q02413 1049 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 GRIK3Q13003 919 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 TDGQ13569 410 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 FUT10Q6P4F1 479 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 TAS1R1Q7RTX1 841 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 APBB1IPQ7Z5R6 666 aaPredicted RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 CDR2LQ86X02 465 aaPredicted RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 FLCNQ8NFG4 579 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 CMASQ8NFW8 434 aaPredicted RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 STAMQ92783 540 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 DNAJC19Q96DA6 116 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 B3GALT6Q96L58 329 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 NTPCRQ9BSD7 190 aaKnown RBP11.09□□□□□ -0.63
VPS28-204ENST00000526054 COLEC11Q9BWP8 271 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 TRIM9Q9C026 710 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 GOLPH3LQ9H4A5 285 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 MIOSQ9NXC5 875 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 SERTAD1Q9UHV2 236 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 DUSP12Q9UNI6 340 aa11.09□□□□□ -0.63
VPS28-204ENST00000526054 CCDC195A0A1B0GUA6 201 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 FRMD3A2A2Y4 597 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 N4BP3O15049 544 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 EFEMP2O95967 443 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 MYL1P05976 194 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 MAPTP10636 758 aaKnown RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 GBP2P32456 591 aaPredicted RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 AFMP43652 599 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 CREMQ03060 361 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 KIAA0319Q5VV43 1072 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 CWF19L1Q69YN2 538 aaKnown RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 CNNM4Q6P4Q7 775 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 CYP26C1Q6V0L0 522 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 HAUS6Q7Z4H7 955 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 SFR1Q86XK3 245 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 TMEM161BQ8NDZ6 487 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 SMG7Q92540 1137 aaKnown RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 KCNN1Q92952 543 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 GBP4Q96PP9 640 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 C7orf25Q9BPX7 421 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 ADPGKQ9BRR6 497 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 MRPL4Q9BYD3 311 aaKnown RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 KCNK12Q9HB15 430 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 RXFP1Q9HBX9 757 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 WDR6Q9NNW5 1121 aaKnown RBP11.08□□□□□ -0.64
VPS28-204ENST00000526054 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.08□□□□□ -0.645e-6■□□□□ 10.2
VPS28-204ENST00000526054 PANK4Q9NVE7 773 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 KLK14Q9P0G3 267 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 IGSF9Q9P2J2 1179 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 PARP2Q9UGN5 583 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 ADAM28Q9UKQ2 775 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 FBXL21Q9UKT6 434 aa11.08□□□□□ -0.64
VPS28-204ENST00000526054 SF3B1O75533 1304 aaKnown RBP eCLIP11.08□□□□□ -0.643e-6■■■■■ 56
VPS28-204ENST00000526054 DOCK8Q8NF50 2099 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms