RNA–Protein interactions for RNA: ENST00000526000.5

CD44-221, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 722 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-221ENST00000526000 CFAP54Q96N23 3096 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 C2orf16Q68DN1 1984 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 CCDC169A6NNP5 214 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SFI1A8K8P3 1242 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 ACKR2O00590 384 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 PRRG1O14668 218 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SEC24AO95486 1093 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 LRG1P02750 347 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 MYL4P12829 197 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 PTPN2P17706 415 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 CYP11B2P19099 503 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 FGFR3P22607 806 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 HOXC13P31276 330 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 VIPR2P41587 438 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 ANAPC15P60006 121 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 CREMQ03060 361 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 PRKCQQ04759 706 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SOX4Q06945 474 aaPredicted RBP7.24□□□□□ -1.25
CD44-221ENST00000526000 MTAPQ13126 283 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 PCBP1Q15365 356 aaKnown RBP eCLIP7.24□□□□□ -1.25
CD44-221ENST00000526000 NAB2Q15742 525 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 C8orf34Q49A92 452 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SEZ6Q53EL9 994 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 ATF7IP2Q5U623 682 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.24□□□□□ -1.25
CD44-221ENST00000526000 C3orf58Q8NDZ4 430 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 WASF1Q92558 559 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 DDX27Q96GQ7 796 aaKnown RBP7.24□□□□□ -1.25
CD44-221ENST00000526000 ZBTB45Q96K62 511 aaPredicted RBP7.24□□□□□ -1.25
CD44-221ENST00000526000 ZSWIM3Q96MP5 696 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 MTMR9Q96QG7 549 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 NACC1Q96RE7 527 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 TCHPQ9BT92 498 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 BRD9Q9H8M2 597 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 LMAN1LQ9HAT1 526 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 CYP4F11Q9HBI6 524 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 ZFP37Q9Y6Q3 630 aaPredicted RBP7.24□□□□□ -1.25
CD44-221ENST00000526000 WDR81Q562E7 1941 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SPTBN2O15020 2390 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 STK36Q9NRP7 1315 aa7.24□□□□□ -1.25
CD44-221ENST00000526000 SMIM28A0A1B0GU29 152 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 K7ERI5 159 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 TULP1O00294 542 aaPredicted RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 XRCC6P12956 609 aaKnown RBP eCLIP7.23□□□□□ -1.25
CD44-221ENST00000526000 GDI1P31150 447 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 CCT6AP40227 531 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 CCR2P41597 374 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 PFKPQ01813 784 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 ROR1Q01973 937 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 SPAG1Q07617 926 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 SPEM2Q0P670 501 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 ELAVL2Q12926 359 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 SRSF5Q13243 272 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 FZD5Q13467 585 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 TRIM29Q14134 588 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 NBR1Q14596 966 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 ZRSR1Q15695 479 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 FAM187BQ17R55 369 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 UVSSAQ2YD98 709 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 FAM78AQ5JUQ0 283 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 HEATR6Q6AI08 1181 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 ZNF852Q6ZMS4 543 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 PRR23BQ6ZRT6 265 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 GPR65Q8IYL9 337 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 NSUN7Q8NE18 718 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 MCPH1Q8NEM0 835 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 C18orf25Q96B23 403 aaPredicted RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 IFT74Q96LB3 600 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 ZMAT2Q96NC0 199 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 PPP1R10Q96QC0 940 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 DDX23Q9BUQ8 820 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 TARS2Q9BW92 718 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 NFKBIZQ9BYH8 718 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 C2orf40Q9H1Z8 148 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 ZFP14Q9HCL3 533 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 TUFT1Q9NNX1 390 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 PARD6AQ9NPB6 346 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 RBM12Q9NTZ6 932 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 ZSCAN32Q9NX65 697 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 DLL3Q9NYJ7 618 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 MTRRQ9UBK8 725 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 SMG5Q9UPR3 1016 aaKnown RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 KIAA1024Q9UPX6 916 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 TIMM13Q9Y5L4 95 aaPredicted RBP7.23□□□□□ -1.25
CD44-221ENST00000526000 USP34Q70CQ2 3546 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 DOCK8Q8NF50 2099 aa7.23□□□□□ -1.25
CD44-221ENST00000526000 WDR27A2RRH5 827 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 SHISA7A6NL88 538 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 CHURC1-FNTBB4DL54 471 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 E9PMD0 336 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 PODXLO00592 558 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 NCAM2O15394 837 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 TRAPPC3O43617 180 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 PAPLNO95428 1278 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 OR4Q2P0C623 313 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 CCNE1P24864 410 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 CDC25AP30304 524 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 NAMPTP43490 491 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 SOX9P48436 509 aa7.22□□□□□ -1.25
CD44-221ENST00000526000 FNTBP49356 437 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms