RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 ATL3Q6DD88 541 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 PRSS55Q6UWB4 352 aaPredicted RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 ZNF720Q7Z2F6 126 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 PALB2Q86YC2 1186 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 GPR65Q8IYL9 337 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 KCNG4Q8TDN1 519 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 DDX27Q96GQ7 796 aaKnown RBP22.82■■□□□ 1.24
VPS28-203ENST00000524521 TBC1D7Q9P0N9 293 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 CFAP45Q9UL16 551 aa22.82■■□□□ 1.24
VPS28-203ENST00000524521 TMEM189-UBE2V1I3L0A0 370 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 GLUD1P00367 558 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 MYBP10242 640 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 GAP43P17677 238 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 DNM1Q05193 864 aaKnown RBP22.81■■□□□ 1.24
VPS28-203ENST00000524521 ATAT1Q5SQI0 421 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 SHC4Q6S5L8 630 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 TMC5Q6UXY8 1006 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 MAP4K3Q8IVH8 894 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 STAMQ92783 540 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 C18orf25Q96B23 403 aaPredicted RBP22.81■■□□□ 1.24
VPS28-203ENST00000524521 RIPOR3Q96MK2 946 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 C1QTNF1Q9BXJ1 281 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 ST6GALNAC4Q9H4F1 302 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 MRPL44Q9H9J2 332 aaKnown RBP22.81■■□□□ 1.24
VPS28-203ENST00000524521 FNIP2Q9P278 1114 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 SEL1LQ9UBV2 794 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 CITO14578 2027 aa22.81■■□□□ 1.24
VPS28-203ENST00000524521 LOC730098B7Z3J9 87 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 ANKRD63C9JTQ0 380 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 OGTO15294 1046 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 SPATA31D3P0C874 917 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 CXCL8P10145 99 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 TNFSF9P41273 254 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 MTHFRP42898 656 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 ME1P48163 572 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 CREMQ03060 361 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 KYAT1Q16773 422 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 HERC4Q5GLZ8 1057 aaPredicted RBP22.8■■□□□ 1.24
VPS28-203ENST00000524521 AXDND1Q5T1B0 1012 aaPredicted RBP22.8■■□□□ 1.24
VPS28-203ENST00000524521 SLC39A4Q6P5W5 647 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 SPATA31D4Q6ZUB0 917 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 RNF135Q8IUD6 432 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 NECTIN4Q96NY8 510 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 MSTO1Q9BUK6 570 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 SFXN1Q9H9B4 322 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 PLEKHA5Q9HAU0 1116 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 MAN1C1Q9NR34 630 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 DPP7Q9UHL4 492 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 PCDHA7Q9UN72 937 aa22.8■■□□□ 1.24
VPS28-203ENST00000524521 A0A0B4J269 797 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 PODXLO00592 558 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 TRAPPC3O43617 180 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 ALADP13716 330 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 SP100P23497 879 aaPredicted RBP22.79■■□□□ 1.24
VPS28-203ENST00000524521 BRCC3P46736 316 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 SPAG1Q07617 926 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 ELMSAN1Q6PJG2 1045 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 CD300LGQ6UXG3 332 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 C3orf58Q8NDZ4 430 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 LNX1Q8TBB1 728 aaPredicted RBP22.79■■□□□ 1.24
VPS28-203ENST00000524521 PIK3R5Q8WYR1 880 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 DHX58Q96C10 678 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 POMKQ9H5K3 350 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 RPF1Q9H9Y2 349 aaKnown RBP22.79■■□□□ 1.24
VPS28-203ENST00000524521 PANK4Q9NVE7 773 aa22.79■■□□□ 1.24
VPS28-203ENST00000524521 TTC26A0AVF1 554 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 I3L4J1 428 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 DCXO43602 365 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 RPL9P32969 192 aaKnown RBP22.78■■□□□ 1.24
VPS28-203ENST00000524521 E2F4Q16254 413 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 PSMD5Q16401 504 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 ZBTB41Q5SVQ8 909 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 PDZRN4Q6ZMN7 1036 aaPredicted RBP22.78■■□□□ 1.24
VPS28-203ENST00000524521 IQUBQ8NA54 791 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 FEZF2Q8TBJ5 459 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 HVCN1Q96D96 273 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 KIF12Q96FN5 646 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 CLSTN3Q9BQT9 956 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 LRRC27Q9C0I9 530 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 CUEDC2Q9H467 287 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 TSHZ2Q9NRE2 1034 aa22.78■■□□□ 1.24
VPS28-203ENST00000524521 LACTBL1A8MY62 500 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 TISP43B9A030 160 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 TGM5O43548 720 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 GCNT3O95395 438 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 FGFR3P22607 806 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 PPP2R3AQ06190 1150 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 ADALQ6DHV7 355 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 SLFN12LQ6IEE8 588 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 PDXDC1Q6P996 788 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 GPR149Q86SP6 731 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 CCDC65Q8IXS2 484 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 FAM212AQ96EL1 285 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 TNMDQ9H2S6 317 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 IKZF4Q9H2S9 585 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 MUTYHQ9UIF7 546 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 RCOR1Q9UKL0 485 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 NUB1Q9Y5A7 615 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 PCDHB13Q9Y5F0 798 aa22.77■■□□□ 1.24
VPS28-203ENST00000524521 MUC3AQ02505 3323 aa22.76■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms