RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 GAS2L3Q86XJ1 694 aa22.74■■□□□ 1.23
LSM6-207ENST00000515311 HERC6Q8IVU3 1022 aa22.74■■□□□ 1.23
LSM6-207ENST00000515311 ZMAT2Q96NC0 199 aaKnown RBP22.74■■□□□ 1.23
LSM6-207ENST00000515311 CASD1Q96PB1 797 aa22.74■■□□□ 1.23
LSM6-207ENST00000515311 PPP1R10Q96QC0 940 aaKnown RBP22.74■■□□□ 1.23
LSM6-207ENST00000515311 MRPL9Q9BYD2 267 aaKnown RBP22.74■■□□□ 1.23
LSM6-207ENST00000515311 CXCL16Q9H2A7 254 aa22.74■■□□□ 1.23
LSM6-207ENST00000515311 RC3H2Q9HBD1 1191 aaKnown RBP22.74■■□□□ 1.23
LSM6-207ENST00000515311 LRRIQ3A6PVS8 624 aaPredicted RBP22.73■■□□□ 1.23
LSM6-207ENST00000515311 STX10O60499 249 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 NFICP08651 508 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 DLATP10515 647 aaKnown RBP22.73■■□□□ 1.23
LSM6-207ENST00000515311 SCNN1GP51170 649 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 AFF1P51825 1210 aaKnown RBP22.73■■□□□ 1.23
LSM6-207ENST00000515311 AP3M2P53677 418 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 ZBTB6Q15916 424 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 HSP90AA4PQ58FG1 418 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 C1orf220Q5T0J3 134 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 RNF214Q8ND24 703 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 ANKRD20A12PQ8NF67 263 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 SLC35C1Q96A29 364 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 ZNF689Q96CS4 500 aaPredicted RBP22.73■■□□□ 1.23
LSM6-207ENST00000515311 KIF12Q96FN5 646 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 SLC38A7Q9NVC3 462 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 INPP5FQ9Y2H2 1132 aa22.73■■□□□ 1.23
LSM6-207ENST00000515311 XPOTO43592 962 aaKnown RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 THP07101 528 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 GTF2H1P32780 548 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 MTIF2P46199 727 aaKnown RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 DLG4P78352 724 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 HTRA4P83105 476 aaPredicted RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 GLRA4Q5JXX5 417 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 TMCO2Q7Z6W1 182 aaPredicted RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 EFCAB13Q8IY85 973 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 CMTR2Q8IYT2 770 aaKnown RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 CACTINQ8WUQ7 758 aaKnown RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 INTS13Q9NVM9 706 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 LIMA1Q9UHB6 759 aaKnown RBP22.72■■□□□ 1.23
LSM6-207ENST00000515311 PLAGL2Q9UPG8 496 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.72■■□□□ 1.23
LSM6-207ENST00000515311 PTPRJQ12913 1337 aa22.72■■□□□ 1.23
LSM6-207ENST00000515311 TRIM49P0CI25 452 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 TRIM49CP0CI26 452 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 TNNI1P19237 187 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 CYP3A5P20815 502 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 CDK11BP21127 795 aaKnown RBP22.71■■□□□ 1.23
LSM6-207ENST00000515311 HOXD11P31277 338 aaPredicted RBP22.71■■□□□ 1.23
LSM6-207ENST00000515311 GATMP50440 423 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 NAB2Q15742 525 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 MAN2A1Q16706 1144 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 DUOXA2Q1HG44 320 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 DCAF17Q5H9S7 520 aaPredicted RBP22.71■■□□□ 1.23
LSM6-207ENST00000515311 TCERG1LQ5VWI1 586 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 LRRC43Q8N309 656 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 YME1L1Q96TA2 773 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 POP1Q99575 1024 aaKnown RBP22.71■■□□□ 1.23
LSM6-207ENST00000515311 TUBGCP2Q9BSJ2 902 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 RBSNQ9H1K0 784 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 TBC1D13Q9NVG8 400 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 MIOSQ9NXC5 875 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 UBQLN1Q9UMX0 589 aaKnown RBP22.71■■□□□ 1.23
LSM6-207ENST00000515311 INSL6Q9Y581 213 aa22.71■■□□□ 1.23
LSM6-207ENST00000515311 LRRC10BA6NIK2 292 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 TBKBP1A7MCY6 615 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 POMCP01189 267 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 ATP1A3P13637 1013 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 TFAMQ00059 246 aaKnown RBP22.7■■□□□ 1.22
LSM6-207ENST00000515311 KRT31Q15323 416 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 FAM117BQ6P1L5 589 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 CREBRFQ8IUR6 639 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 BEST2Q8NFU1 509 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 ANKRD36BP1Q96IX9 119 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 RAD9AQ99638 391 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 ZBED2Q9BTP6 218 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 PRO3102Q9H379 93 aa22.7■■□□□ 1.22
LSM6-207ENST00000515311 GBF1Q92538 1859 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 TNNC2P02585 160 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 TMEM191BP0C7N4 346 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 RNASELQ05823 741 aaKnown RBP22.69■■□□□ 1.22
LSM6-207ENST00000515311 DSC1Q08554 894 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 OR5B17Q8NGF7 314 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 ZNF516Q92618 1163 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 C18orf25Q96B23 403 aaPredicted RBP22.69■■□□□ 1.22
LSM6-207ENST00000515311 MTMR12Q9C0I1 747 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 TMEM8AQ9HCN3 771 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 TUBGCP4Q9UGJ1 667 aa22.69■■□□□ 1.22
LSM6-207ENST00000515311 TULP1O00294 542 aaPredicted RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 AFPP02771 609 aaKnown RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 TPM2P07951 284 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 PRKCSHP14314 528 aaPredicted RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 PPP3CAQ08209 521 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 KCNH2Q12809 1159 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 TUSC3Q13454 348 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 LMBRD2Q68DH5 695 aaPredicted RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 C15orf39Q6ZRI6 1047 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 APTXQ7Z2E3 356 aaKnown RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 TDHQ8IZJ6 230 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 SP7Q8TDD2 431 aaPredicted RBP22.68■■□□□ 1.22
LSM6-207ENST00000515311 UROC1Q96N76 676 aa22.68■■□□□ 1.22
LSM6-207ENST00000515311 DPP3Q9NY33 737 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms