RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CTTNQ14247 550 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 ZNF662Q6ZS27 426 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 LCA5Q86VQ0 697 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 NUDCD3Q8IVD9 361 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 FBXO25Q8TCJ0 367 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 LZICQ8WZA0 190 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 ALKBH8Q96BT7 664 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 CFAP36Q96G28 342 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 RMDN3Q96TC7 470 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 AGPAT1Q99943 283 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 FOXP3Q9BZS1 431 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 INTS2Q9H0H0 1204 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 PPCSQ9HAB8 311 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 ALG13Q9NP73 1137 aaKnown RBP11.9□□□□□ -0.5
TCOF1-211ENST00000513346 NAGPAQ9UK23 515 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 KIF20BQ96Q89 1820 aa11.9□□□□□ -0.5
TCOF1-211ENST00000513346 MYMKA6NI61 221 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 UBE2Q2LH0YL09 131 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 OCA2Q04671 838 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 XRCC4Q13426 336 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 TRIP10Q15642 601 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 TBC1D23Q9NUY8 699 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 TMEM260Q9NX78 707 aa11.9□□□□□ -0.51
TCOF1-211ENST00000513346 HOXD10P28358 340 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 TMED10P49755 219 aaKnown RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 PDIA5Q14554 519 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 DNAJC24Q6P3W2 148 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 SDCCAG3Q96C92 435 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 THAP11Q96EK4 314 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 STK33Q9BYT3 514 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 UPF3AQ9H1J1 476 aaKnown RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 AIPL1Q9NZN9 384 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 CNOT7Q9UIV1 285 aaKnown RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 GOLGA8SH3BPF8 625 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 GOLGA8MH3BSY2 632 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 ABL1P00519 1130 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 AKR1B1P15121 316 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 PTPN4P29074 926 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 DARS2Q6PI48 645 aaKnown RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 NLRP9Q7RTR0 991 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 PRCCQ92733 491 aaPredicted RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 PGM2Q96G03 612 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 FBXO40Q9UH90 709 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 ALG6Q9Y672 507 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 SLC9A1P19634 815 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 AP1B1Q10567 949 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 NTRK3Q16288 839 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 FAM192AQ9GZU8 254 aa11.89□□□□□ -0.51
TCOF1-211ENST00000513346 RAVER2Q9HCJ3 691 aaKnown RBP11.89□□□□□ -0.51
TCOF1-211ENST00000513346 PDXKO00764 312 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 PJA2O43164 708 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 COPB2P35606 906 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 RFC5P40937 340 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 KCNJ1P48048 391 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 ERMARDQ5T6L9 678 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 SNX30Q5VWJ9 437 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 KRT39Q6A163 491 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 ABI1Q8IZP0 508 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 IQCKQ8N0W5 287 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 PARD3BQ8TEW8 1205 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 FEM1BQ9UK73 627 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 SFI1A8K8P3 1242 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 CES2O00748 559 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 MGEA5O60502 916 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 COILP38432 576 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 CCNHP51946 323 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 TFAMQ00059 246 aaKnown RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 IFRD2Q12894 506 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 ANKRD36BP1Q96IX9 119 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 OSBPL8Q9BZF1 889 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 UBXN6Q9BZV1 441 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 RNPEPL1Q9HAU8 725 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 ABCF3Q9NUQ8 709 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 POTEB3A0JP26 581 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 POTECB2RU33 542 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 LIN7AO14910 233 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 RTN2O75298 545 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 FAM200BP0CF97 657 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 KRT10P13645 584 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 DPEP1P16444 411 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 DRD4P21917 467 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 RPS12P25398 132 aaKnown RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 EDRF1Q3B7T1 1238 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 INTS5Q6P9B9 1019 aaKnown RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 POTEBQ6S5H4 581 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 RNF25Q96BH1 459 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 PSMC3IPQ9P2W1 217 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 CYTH1Q15438 398 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 SNRNP48Q6IEG0 339 aaKnown RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 LVRNQ6Q4G3 990 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 PACSIN1Q9BY11 444 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 PRKAG2Q9UGJ0 569 aa11.88□□□□□ -0.51
TCOF1-211ENST00000513346 HERC5Q9UII4 1024 aaKnown RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.88□□□□□ -0.51
TCOF1-211ENST00000513346 CLDN3O15551 220 aa11.87□□□□□ -0.51
TCOF1-211ENST00000513346 ABCD1P33897 745 aa11.87□□□□□ -0.51
TCOF1-211ENST00000513346 STRIP1Q5VSL9 837 aa11.87□□□□□ -0.51
TCOF1-211ENST00000513346 RSBN1LQ6PCB5 846 aaPredicted RBP11.87□□□□□ -0.51
TCOF1-211ENST00000513346 ERICH1Q86X53 443 aa11.87□□□□□ -0.51
TCOF1-211ENST00000513346 TRIM50Q86XT4 487 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms