RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 THNSL1Q8IYQ7 743 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 PPM1NQ8N819 430 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SCFD2Q8WU76 684 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 RNF34Q969K3 372 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 PAGR1Q9BTK6 254 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 NPHS2Q9NP85 383 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 DDX56Q9NY93 547 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 MYO3BQ8WXR4 1341 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 FER1L4A9Z1Z3 1794 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SRRM3A6NNA2 597 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SPECC1L-ADORA2AF8WAN1 911 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SURF1Q15526 300 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 IRF2BP2Q7Z5L9 587 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 PGM2Q96G03 612 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 FOXP3Q9BZS1 431 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 IFT122Q9HBG6 1241 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 KCNH7Q9NS40 1196 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 WHRNQ9P202 907 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC9A2Q9UBY0 812 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ANP32DO95626 131 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ATP6V1G2O95670 118 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 TAL1P17542 331 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 GARSP41250 739 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 IGBP1P78318 339 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 TFDP1Q14186 410 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 MAP7Q14244 749 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CBWD2Q8IUF1 395 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 NME8Q8N427 588 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 HEXIM2Q96MH2 286 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 STRIP2Q9ULQ0 834 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CAMTA1Q9Y6Y1 1673 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 KRT7P08729 469 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ARP10275 920 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CYP11B1P15538 503 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 CNGA1P29973 690 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ARL1P40616 181 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ACOT2P49753 483 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 ARMC2Q8NEN0 867 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 TATDN2Q93075 761 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 SENP7Q9BQF6 1050 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 KCTD10Q9H3F6 313 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 UBN1Q9NPG3 1134 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 GGA2Q9UJY4 613 aa8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 TRPC5Q9UL62 973 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-216ENST00000512820 LRRC37A3O60309 1634 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 KITP10721 976 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 PYGMP11217 842 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMC1P62191 440 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 GEN1Q17RS7 908 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC27A3Q5K4L6 730 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 FOXR2Q6PJQ5 311 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SLC47A2Q86VL8 602 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 NCAPG2Q86XI2 1143 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ADPGKQ9BRR6 497 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 Q9H521 79 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 RNF146Q9NTX7 359 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 PSMC3IPQ9P2W1 217 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 TTLL3Q9Y4R7 772 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ABCC6O95255 1503 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ENTPD3O75355 529 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 KRT38O76015 456 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SHBGP04278 402 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SAT1P21673 171 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SNRPFP62306 86 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 TFDP2Q14188 446 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ZNF699Q32M78 642 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 CBWD6Q4V339 395 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 C2CD6Q53TS8 623 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ZNF667Q5HYK9 610 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 CBWD3Q5JTY5 395 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 CBWD5Q5RIA9 395 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 RIBC1Q8N443 379 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 DEPDC1BQ8WUY9 529 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM163AQ96GL9 167 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 FAM161BQ96MY7 647 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 KIFC3Q9BVG8 833 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 KCNMB3Q9NPA1 279 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 NGRNQ9NPE2 291 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 DDX4Q9NQI0 724 aaKnown RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SYNJ2BP-COX16A0A087WUM0 186 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 NOL4O94818 638 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 TTC16Q8NEE8 873 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 ZKSCAN4Q969J2 545 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 SHISA4Q96DD7 197 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 FGFBP2Q9BYJ0 223 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 KLC2Q9H0B6 622 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 COX16Q9P0S2 106 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 RGPD8O14715 1765 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 TOPAZ1Q8N9V7 1692 aa8.9□□□□□ -0.98
LIMCH1-216ENST00000512820 EML1O00423 815 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 C21orf2O43822 256 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 SLITRK3O94933 977 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 RHBDL3P58872 404 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 AADACL2Q6P093 401 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 RFX8Q6ZV50 586 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 EEPD1Q7L9B9 569 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 AFAP1L2Q8N4X5 818 aa8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 RBBP8NLQ8NC74 664 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 LNX1Q8TBB1 728 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-216ENST00000512820 NSUN6Q8TEA1 469 aaKnown RBP8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms