RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 GAS8O95995 478 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NQO1P15559 274 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 GTF2BQ00403 316 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 MEX3CQ5U5Q3 659 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SPATA21Q7Z572 469 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 VTI1AQ96AJ9 217 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SNF8Q96H20 258 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SERPINB12Q96P63 405 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 MRIQ9BWK5 157 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 KLHL11Q9NVR0 708 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NINJ2Q9NZG7 142 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 TMOD2Q9NZR1 351 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 WHRNQ9P202 907 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SPATA31A6Q5VVP1 1343 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 MUTP22033 750 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 PDE6BP35913 854 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NAA25Q14CX7 972 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 RHBDF2Q6PJF5 856 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 ZNF365Q70YC5 407 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NSMCE1Q8WV22 266 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 KIFAP3Q92845 792 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 RMDN2Q96LZ7 410 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 TGS1Q96RS0 853 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 AFF2P51816 1311 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SORBS3O60504 671 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 SPAG7O75391 227 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 KRT16P08779 473 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 CHRNA5P30532 468 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 DGKZQ13574 1117 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 TCEAL1Q15170 157 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 TKFCQ3LXA3 575 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 NLGN1Q8N2Q7 840 aa9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 DDX1Q92499 740 aaKnown RBP9.87□□□□□ -0.83
LIMCH1-215ENST00000512632 PI4K2BG5E9Z4 385 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ANP32DO95626 131 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 MRPS9P82933 396 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 MTMR1Q13613 665 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 KAZNQ674X7 775 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 GSTA5Q7RTV2 222 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CKAP2Q8WWK9 683 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 NKIRAS1Q9NYS0 192 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TBX20Q9UMR3 447 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CFHP08603 1231 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CD58P19256 250 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CDC25CP30307 473 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 NPTX2P47972 431 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 C11orf70Q9BRQ4 267 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 FAM213AQ9BRX8 229 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 DCLK3Q9C098 648 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ASTN2O75129 1339 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TMED2Q15363 201 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CLEC16AQ2KHT3 1053 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ATP13A4Q4VNC1 1196 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 SPOPLQ6IQ16 392 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 C12orf56Q8IXR9 622 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 C12orf50Q8NA57 414 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ATL2Q8NHH9 583 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TAAR1Q96RJ0 339 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 RAVER2Q9HCJ3 691 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TMEM8AQ9HCN3 771 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ARL2BPQ9Y2Y0 163 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TESPA1A2RU30 521 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 CFAP73A6NFT4 308 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 POC1B-GALNT4F8VUJ3 575 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 RAD17O75943 681 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 COPS2P61201 443 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ZNF568Q3ZCX4 644 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 IZUMO3Q5VZ72 239 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 MCOLN2Q8IZK6 566 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 SPOCK2Q92563 424 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 TMEM39BQ9GZU3 492 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 AGO4Q9HCK5 861 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 KMT5AQ9NQR1 393 aa9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 HERC5Q9UII4 1024 aaKnown RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 ZBTB12Q9Y330 459 aaPredicted RBP9.86□□□□□ -0.83
LIMCH1-215ENST00000512632 RASA4BC9J798 803 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 RASA4O43374 803 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 ZSCAN5DPP0CG00 497 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 KRT10P13645 584 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 FOXN2P32314 431 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 TAS2R40P59535 323 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 ALCAMQ13740 583 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 TMEM161BQ8NDZ6 487 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 MAGEC3Q8TD91 643 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 BSNDQ8WZ55 320 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 FAM212AQ96EL1 285 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 BICD1Q96G01 975 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 SUFUQ9UMX1 484 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 FOCADQ5VW36 1801 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 MROH7Q68CQ1 1323 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 DIAPH2O60879 1101 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 ZNF268Q14587 947 aaPredicted RBP9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 ANKS1BQ7Z6G8 1248 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 PITPNM3Q9BZ71 974 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 KLHL14Q9P2G3 628 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 HNRNPDLO14979 420 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 NPM3O75607 178 aaKnown RBP9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 ATP5DP30049 168 aa9.85□□□□□ -0.83
LIMCH1-215ENST00000512632 NSFP46459 744 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms