RNA–Protein interactions for RNA: ENST00000506063.1

TCOF1-208, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 4

Gene TCOF1, Length 526 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-208ENST00000506063 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ARHGAP33O14559 1287 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 RRP8O43159 456 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 GPAA1O43292 621 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ORC4O43929 436 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 XYLBO75191 536 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CSDE1O75534 798 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 MICAL2O94851 1124 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ATG7O95352 703 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 EGFP01133 1207 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CFIP05156 583 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 HNRNPLP14866 589 aaKnown RBP eCLIP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 P2RY2P41231 377 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 TDO2P48775 406 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CLCN3P51790 818 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 KPNA1P52294 538 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CLDN6P56747 220 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 NLRP11P59045 1033 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 SEMG2Q02383 582 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 RNASELQ05823 741 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CTDSPL2Q05D32 466 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 TNK2Q07912 1038 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CCDC173Q0VFZ6 552 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 OS9Q13438 667 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 DMC1Q14565 340 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 NBR1Q14596 966 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 DUOXA1Q1HG43 343 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 AXDND1Q5T1B0 1012 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 GPATCH4Q5T3I0 446 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 LIN9Q5TKA1 542 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 PCNX4Q63HM2 1172 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 FUT10Q6P4F1 479 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ATG14Q6ZNE5 492 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ARMCX6Q7L4S7 300 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 C11orf74Q86VG3 221 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 FCHSD1Q86WN1 690 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 SAMD3Q8N6K7 520 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 MDGA1Q8NFP4 955 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 TTC8Q8TAM2 541 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 LNX1Q8TBB1 728 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 OXER1Q8TDS5 423 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 NXPE2Q96DL1 559 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 ZNF668Q96K58 619 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CNOT6LQ96LI5 555 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 TMEM209Q96SK2 561 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 LPIN3Q9BQK8 851 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.83□□□□□ -1.86e-6■■■□□ 19.2
TCOF1-208ENST00000506063 BOLA2Q9H3K6 86 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 IL1RAPL2Q9NP60 686 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 FAM105AQ9NUU6 356 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 MIOSQ9NXC5 875 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 DACT1Q9NYF0 836 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 PCDHB9Q9Y5E1 797 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 COL1A2P08123 1366 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 COL27A1Q8IZC6 1860 aaPredicted RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 RTTNQ86VV8 2226 aa3.83□□□□□ -1.8
TCOF1-208ENST00000506063 FN1P02751 2386 aaKnown RBP3.83□□□□□ -1.8
TCOF1-208ENST00000506063 CCDC168Q8NDH2 2452 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ZFC3H1O60293 1989 aaKnown RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ARHGEF37A1IGU5 675 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 PATL2C9JE40 543 aaKnown RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 TRDMT1O14717 391 aaKnown RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 TRIM66O15016 1216 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 BRINP1O60477 761 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ATG13O75143 517 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 POMCP01189 267 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 RNF224P0DH78 156 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ATP5JP18859 108 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 GPC3P51654 580 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 STAT5BP51692 787 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 DGKEP52429 567 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 EPHA5P54756 1037 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 FOXK1P85037 733 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 TLE1Q04724 770 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 GFPT1Q06210 699 aaPredicted RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 RAB33AQ14088 237 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 UVSSAQ2YD98 709 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 MAP7D1Q3KQU3 841 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 USP41Q3LFD5 358 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 LINC00303Q3SY05 128 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 USP39Q53GS9 565 aaKnown RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 C6orf132Q5T0Z8 1188 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 KIAA1614Q5VZ46 1190 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ZNF787Q6DD87 383 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 DHRS13Q6UX07 377 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 MRPL10Q7Z7H8 261 aaKnown RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 FAM26EQ8N5C1 309 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 GIMAP8Q8ND71 665 aaPredicted RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 GSTCDQ8NEC7 633 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 RPLP0P6Q8NHW5 317 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 ZSCAN18Q8TBC5 510 aaPredicted RBP3.82□□□□□ -1.8
TCOF1-208ENST00000506063 CSGALNACT1Q8TDX6 532 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 RLN3Q8WXF3 142 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 BAP1Q92560 729 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 APPBP2Q92624 585 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 FGF11Q92914 225 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 GPRASP2Q96D09 838 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 TMEM176AQ96HP8 235 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 HIC2Q96JB3 615 aa3.82□□□□□ -1.8
TCOF1-208ENST00000506063 APOL6Q9BWW8 343 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms