RNA–Protein interactions for RNA: ENST00000496024.1

CALD1-223, Transcript of caldesmon 1, human

TSL 4

Gene CALD1, Length 557 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-223	ENST00000496024	PDCD11	Q14690	1871 aa	Known RBP	10.7	□□□□□ -0.7
CALD1-223	ENST00000496024	ZC3H11B	A0A1B0GUI2	810 aa	Predicted RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	TTC26	A0AVF1	554 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CARNS1	A5YM72	827 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	C2CD2L	O14523	706 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	FSCN2	O14926	492 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CLIC2	O15247	247 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	EIF3D	O15371	548 aa	Known RBP eCLIP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	LINC01565	O15544	149 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	KIN	O60870	393 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	B3GAT3	O94766	335 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	KIF4A	O95239	1232 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	MYL1	P05976	194 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	KCNE1	P15382	129 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	IGFBP6	P24592	240 aa	Predicted RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CLCNKB	P51801	687 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	GUCY2F	P51841	1108 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	TFF2	Q03403	129 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	STK4	Q13043	487 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	SNW1	Q13573	536 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	SMC1A	Q14683	1233 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	BMS1	Q14692	1282 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	XKR4	Q5GH76	650 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	FUT10	Q6P4F1	479 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	TMEM87A	Q8NBN3	555 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	ZNF507	Q8TCN5	953 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	GPR62	Q9BZJ7	368 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	NGRN	Q9NPE2	291 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	SLC38A7	Q9NVC3	462 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CLDND1	Q9NY35	253 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CNTN3	Q9P232	1028 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	TUBGCP4	Q9UGJ1	667 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	CPSF3	Q9UKF6	684 aa	Known RBP	10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	ADAM28	Q9UKQ2	775 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	ANK1	P16157	1881 aa		10.69	□□□□□ -0.7
CALD1-223	ENST00000496024	C2orf71	A6NGG8	1288 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024		I3L4J1	428 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	SOD2	P04179	222 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	CTSA	P10619	480 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	GART	P22102	1010 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	KCNA5	P22460	613 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	CYP2J2	P51589	502 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	RBM10	P98175	930 aa	Known RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	PSMD2	Q13200	908 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	CLUL1	Q15846	466 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	FAM171A1	Q5VUB5	890 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	JADE1	Q6IE81	842 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	PDE12	Q6L8Q7	609 aa	Known RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	KIAA1841	Q6NSI8	718 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	LLGL2	Q6P1M3	1020 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	CRELD2	Q6UXH1	353 aa	Predicted RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	HS2ST1	Q7LGA3	356 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	CEP57	Q86XR8	500 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	MRPL43	Q8N983	215 aa	Known RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	RDH13	Q8NBN7	331 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	KIAA0895	Q8NCT3	520 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	HLA-C	Q95604	372 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	ZBP1	Q9H171	429 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	UBE2Z	Q9H832	354 aa	Predicted RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	PLEKHA5	Q9HAU0	1116 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	THEG	Q9P2T0	379 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	MAPK8IP1	Q9UQF2	711 aa		10.68	□□□□□ -0.7
CALD1-223	ENST00000496024	TCF20	Q9UGU0	1960 aa	Known RBP	10.68	□□□□□ -0.7
CALD1-223	ENST00000496024		A0A0C4DFX4	3053 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	SF3B1	O75533	1304 aa	Known RBP eCLIP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UBE4B	O95155	1302 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024		H3BQ06	376 aa	Predicted RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	PODXL	O00592	558 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	TGFB1I1	O43294	461 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	EXTL3	O43909	919 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	LDHA	P00338	332 aa	Known RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UROD	P06132	367 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	NFIC	P08651	508 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	BRCC3	P46736	316 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	NDUFV1	P49821	464 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UBE2H	P62256	183 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	TMEM132D	Q14C87	1099 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	PTPN14	Q15678	1187 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	DUSP6	Q16828	381 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UPP1	Q16831	310 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	KNOP1	Q1ED39	458 aa	Known RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	ISM2	Q6H9L7	571 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	DCLRE1A	Q6PJP8	1040 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	GLYCTK	Q8IVS8	523 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	PHF6	Q8IWS0	365 aa	Known RBP eCLIP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	SMYD4	Q8IYR2	804 aa	Predicted RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	RIN2	Q8WYP3	895 aa	Predicted RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UROC1	Q96N76	676 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	HERC2P3	Q9BVR0	1158 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	MRPL17	Q9NRX2	175 aa	Known RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	AGPAT3	Q9NRZ7	376 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	RBAK	Q9NYW8	714 aa	Predicted RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	HSPBP1	Q9NZL4	362 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	HOOK1	Q9UJC3	728 aa	Known RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UBQLN1	Q9UMX0	589 aa	Known RBP	10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	UNC80	Q8N2C7	3258 aa		10.67	□□□□□ -0.7
CALD1-223	ENST00000496024	PPEF2	O14830	753 aa		10.66	□□□□□ -0.7
CALD1-223	ENST00000496024	XPOT	O43592	962 aa	Known RBP	10.66	□□□□□ -0.7
CALD1-223	ENST00000496024	RHOBTB3	O94955	611 aa		10.66	□□□□□ -0.7
CALD1-223	ENST00000496024	SMC2	O95347	1197 aa		10.66	□□□□□ -0.7

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms