RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 POP1Q99575 1024 aaKnown RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 NUP85Q9BW27 656 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 TRIM4Q9C037 500 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 DCLK3Q9C098 648 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 TUFT1Q9NNX1 390 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 DLGAP2Q9P1A6 1054 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 PDP2Q9P2J9 529 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 NOCTQ9UK39 431 aaKnown RBP10.31□□□□□ -0.76
SYNE1-230ENST00000495090 VAV3Q9UKW4 847 aa10.31□□□□□ -0.76
SYNE1-230ENST00000495090 MAGEA13PA6NCF6 341 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L10C9JJH3 530 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CLDN3O15551 220 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC22O60826 627 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 FOSP01100 380 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 TRIM49P0CI25 452 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 TRIM49CP0CI26 452 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 SREBF1P36956 1147 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 PTP4A2Q12974 167 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CUL3Q13618 768 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 KPNB1Q14974 876 aaKnown RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CTC1Q2NKJ3 1217 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 EPC2Q52LR7 807 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 PRR16Q569H4 304 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 C1orf186Q6ZWK4 172 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF720Q7Z2F6 126 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 SDCCAG8Q86SQ7 713 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC125Q86Z20 511 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 FAM71AQ8IYT1 594 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 ARHGAP18Q8N392 663 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 ZCCHC9Q8N567 271 aaKnown RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 TTC8Q8TAM2 541 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 ITFG2Q969R8 447 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 PCDHB18PQ96TA0 734 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 GORASP1Q9BQQ3 440 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 CDCA7Q9BWT1 371 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 UBE2TQ9NPD8 197 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 ZFP69BQ9UJL9 534 aa10.3□□□□□ -0.76
SYNE1-230ENST00000495090 GREB1LQ9C091 1923 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L15C9J2P7 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L13C9JLJ4 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L11C9JVI0 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L18D6R9N7 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L22D6RA61 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L17D6RBQ6 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L19D6RCP7 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L20D6RJB6 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 MEIS2O14770 477 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 HGSO14964 777 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ENTPD5O75356 428 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 RNF8O76064 485 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 AKR1B1P15121 316 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 NMT1P30419 496 aaKnown RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ADCY8P40145 1251 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 RFC5P40937 340 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SLC1A1P43005 524 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 MCCD1P59942 119 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L24Q0WX57 530 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ZC3H12AQ5D1E8 599 aaKnown RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SNX30Q5VWJ9 437 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 FYB2Q5VWT5 728 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TTBK2Q6IQ55 1244 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 USP17L6PQ6QN14 398 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ANKS1BQ7Z6G8 1248 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 CLNKQ7Z7G1 428 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 MYCT1Q8N699 235 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 C1orf54Q8WWF1 131 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 GATA6Q92908 595 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 NR1H4Q96RI1 486 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 EIF2AK1Q9BQI3 630 aaKnown RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 CHST7Q9NS84 486 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 LRRC4BQ9NT99 713 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 STX18Q9P2W9 335 aaKnown RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF212Q9UDV6 495 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TBK1Q9UHD2 729 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ATRNL1Q5VV63 1379 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 FOXO6A8MYZ6 492 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 EML1O00423 815 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 MAP3K13O43283 966 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ZBED4O75132 1171 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TJP3O95049 919 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 CBX6O95503 412 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TM4SF1P30408 202 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SH3BGRP55822 239 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SLC34A1Q06495 639 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 AP1B1Q10567 949 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TMED2Q15363 201 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 CCDC6Q16204 474 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 CCNG2Q16589 344 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 TAF1BQ53T94 588 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF449Q6P9G9 518 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SEPT14Q6ZU15 432 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 NLRP9Q7RTR0 991 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 C12orf56Q8IXR9 622 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 ZNF653Q96CK0 615 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 FAM81BQ96LP2 452 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 FGD4Q96M96 766 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 SMC6Q96SB8 1091 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 BTBD10Q9BSF8 475 aa10.29□□□□□ -0.76
SYNE1-230ENST00000495090 STRA6Q9BX79 667 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms