RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 SMTNP53814 917 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 RAB33AQ14088 237 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 ZNF568Q3ZCX4 644 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 AXDND1Q5T1B0 1012 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-213ENST00000493475 GRASPQ7Z6J2 395 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-213ENST00000493475 ELMOD1Q8N336 334 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 LNX1Q8TBB1 728 aaPredicted RBP12.71□□□□□ -0.37
COL6A3-213ENST00000493475 SLC7A14Q8TBB6 771 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 GPR152Q8TDT2 470 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 RSAD2Q8WXG1 361 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 BCO2Q9BYV7 579 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 CCDC113Q9H0I3 377 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 KIAA1024Q9UPX6 916 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 TNFSF13BQ9Y275 285 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 NUB1Q9Y5A7 615 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 NUMBLQ9Y6R0 609 aa12.71□□□□□ -0.37
COL6A3-213ENST00000493475 PTPRZ1P23471 2315 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 A0A087WWV3 80 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 H0YCG3 227 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 PRRG1O14668 218 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 PTGESO14684 152 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 NCAM2O15394 837 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 DTNBO60941 627 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 N4BP1O75113 896 aaKnown RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 NPR3P17342 541 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 OR1D2P34982 312 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 PRKCQQ04759 706 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 HTR4Q13639 388 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 PABPC1LQ4VXU2 614 aaKnown RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 SPECC1Q5M775 1068 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 RSPO2Q6UXX9 243 aaPredicted RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 DTHD1Q6ZMT9 781 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 ASCL5Q7RTU5 278 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 RABGGTAQ92696 567 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 CDK5RAP3Q96JB5 506 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 HINFPQ9BQA5 517 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 CLSTN3Q9BQT9 956 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 KMT5AQ9NQR1 393 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 DDX19AQ9NUU7 478 aaKnown RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 MTRRQ9UBK8 725 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 MRPS17Q9Y2R5 130 aaKnown RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 MRPS23Q9Y3D9 190 aaKnown RBP12.7□□□□□ -0.38
COL6A3-213ENST00000493475 BACE2Q9Y5Z0 518 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 USP34Q70CQ2 3546 aa12.7□□□□□ -0.38
COL6A3-213ENST00000493475 MYO10Q9HD67 2058 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 ZNF197O14709 1029 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 SYN3O14994 580 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 CCL16O15467 120 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 LMNAP02545 664 aaKnown RBP12.69□□□□□ -0.38
COL6A3-213ENST00000493475 MCF2P10911 925 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 FGFR3P22607 806 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 RPL9P32969 192 aaKnown RBP12.69□□□□□ -0.38
COL6A3-213ENST00000493475 GRM5P41594 1212 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 CLCNKBP51801 687 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 PEX3P56589 373 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 IQCEQ6IPM2 695 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 ADSSL1Q8N142 457 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 FGF13Q92913 245 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 SNX27Q96L92 541 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 ACAP3Q96P50 834 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 NELL2Q99435 816 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 PAAF1Q9BRP4 392 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 TMEM134Q9H6X4 195 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 GDE1Q9NZC3 331 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 MAFFQ9ULX9 164 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 CDY1Q9Y6F8 540 aa12.69□□□□□ -0.38
COL6A3-213ENST00000493475 RIF1Q5UIP0 2472 aaKnown RBP12.68□□□□□ -0.38
COL6A3-213ENST00000493475 KRBA1A5PL33 1030 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PI15O43692 258 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 SCP2P22307 547 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 MARCKSP29966 332 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PRPHP41219 470 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PTGDRQ13258 359 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PPP2R5DQ14738 602 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 UPP1Q16831 310 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 RILPL1Q5EBL4 403 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 GLRA4Q5JXX5 417 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 ERMP1Q7Z2K6 904 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 C1orf210Q8IVY1 113 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 APPL2Q8NEU8 664 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PJA1Q8NG27 643 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 BSNDQ8WZ55 320 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 SECISBP2LQ93073 1101 aaKnown RBP12.68□□□□□ -0.38
COL6A3-213ENST00000493475 PPP1R10Q96QC0 940 aaKnown RBP12.68□□□□□ -0.38
COL6A3-213ENST00000493475 KIFC3Q9BVG8 833 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 KCND2Q9NZV8 630 aa12.68□□□□□ -0.38
COL6A3-213ENST00000493475 SMIM28A0A1B0GU29 152 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 KANSL1LA0AUZ9 987 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 PODXLO00592 558 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 WNT7AO00755 349 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 LAMTOR5O43504 91 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 XPOTO43592 962 aaKnown RBP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 PTPN2P17706 415 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 ABCD1P33897 745 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 MATR3P43243 847 aaKnown RBP eCLIP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 NPTX2P47972 431 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 STARD6P59095 220 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 MLF2Q15773 248 aaPredicted RBP12.67□□□□□ -0.38
COL6A3-213ENST00000493475 KYAT1Q16773 422 aa12.67□□□□□ -0.38
COL6A3-213ENST00000493475 CYP4A22Q5TCH4 519 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms