RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 CCDC194A0A1B0GVG4 234 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 SHISA7A6NL88 538 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 TMEM189-UBE2V1I3L0A0 370 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 PTGESO14684 152 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 NCAM2O15394 837 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 ADAM12O43184 909 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 SLITRK3O94933 977 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 KIF4AO95239 1232 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 NPTXRO95502 500 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 GLRA2P23416 452 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 TARSP26639 723 aaKnown RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 CYP4A11Q02928 519 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 FZD5Q13467 585 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 CTTNQ14247 550 aaKnown RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 FAM187BQ17R55 369 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 PABPC1LQ4VXU2 614 aaKnown RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 FAM171A1Q5VUB5 890 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 NCAPH2Q6IBW4 605 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 RUFY3Q7L099 469 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 SLFN12Q8IYM2 578 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 SLC7A14Q8TBB6 771 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 RABGGTAQ92696 567 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 DNASE1L2Q92874 299 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 YTHDC1Q96MU7 727 aaKnown RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 HSD17B14Q9BPX1 270 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 RTKNQ9BST9 563 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 IER2Q9BTL4 223 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 GDE1Q9NZC3 331 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 KLK14Q9P0G3 267 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 CACNG4Q9UBN1 327 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 CDV3Q9UKY7 258 aaKnown RBP9.08□□□□□ -0.96
USP39-216ENST00000490193 CACNA1GO43497 2377 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 TRIP11Q15643 1979 aa9.08□□□□□ -0.96
USP39-216ENST00000490193 STK36Q9NRP7 1315 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CHD8Q9HCK8 2581 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CPLX1O14810 134 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CCL16O15467 120 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CCNT1O60563 726 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 PPP1R37O75864 691 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 THP07101 528 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 TDGF1P13385 188 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CD72P21854 359 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 FGFR3P22607 806 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 RBM25P49756 843 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 RARRES1P49788 294 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 IRX6P78412 446 aaPredicted RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 ADCY1Q08828 1119 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 AXDND1Q5T1B0 1012 aaPredicted RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 CDCA2Q69YH5 1023 aaPredicted RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 CPLX2Q6PUV4 134 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 ZNF852Q6ZMS4 543 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 TPRG1Q6ZUI0 275 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 CDR2LQ86X02 465 aaPredicted RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 TPH2Q8IWU9 490 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 PLPP6Q8IY26 295 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 HASPINQ8TF76 798 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 KXD1Q9BQD3 176 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 EIF2AK1Q9BQI3 630 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 FZD8Q9H461 694 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 PRMT7Q9NVM4 692 aaPredicted RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 HCFC1R1Q9NWW0 138 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 DNMT3BQ9UBC3 853 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 MTRRQ9UBK8 725 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 PARP2Q9UGN5 583 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 KCNJ14Q9UNX9 436 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 MRPS17Q9Y2R5 130 aaKnown RBP9.07□□□□□ -0.96
USP39-216ENST00000490193 USP24Q9UPU5 2620 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 TICRRQ7Z2Z1 1910 aa9.07□□□□□ -0.96
USP39-216ENST00000490193 ARHGEF37A1IGU5 675 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 CASTOR2A6NHX0 329 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 BHMG1C9JSJ3 638 aaPredicted RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 N4BP3O15049 544 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 EPB41L2O43491 1005 aaKnown RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 LRP3O75074 770 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 BAG4O95429 457 aaKnown RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 ADRB1P08588 477 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 XRCC6P12956 609 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP39-216ENST00000490193 OR1D2P34982 312 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 NRLP54845 237 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 ST3GAL2Q16842 350 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 PIK3AP1Q6ZUJ8 805 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 SKAP1Q86WV1 359 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 CEP57Q86XR8 500 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 ELSPBP1Q96BH3 223 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 KCNK17Q96T54 332 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 TM6SF1Q9BZW5 370 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 POLR3FQ9H1D9 316 aaPredicted RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 CHRDQ9H2X0 955 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 PDZD7Q9H5P4 517 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 PARD6AQ9NPB6 346 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 POLIQ9UNA4 740 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 MRPS23Q9Y3D9 190 aaKnown RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 BACE2Q9Y5Z0 518 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 F5P12259 2224 aa9.06□□□□□ -0.96
USP39-216ENST00000490193 PDCD11Q14690 1871 aaKnown RBP9.06□□□□□ -0.96
USP39-216ENST00000490193 CHD6Q8TD26 2715 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 MARCH6O60337 910 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 CDKL5O76039 1030 aa9.05□□□□□ -0.96
USP39-216ENST00000490193 RECQL4O94761 1208 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms