RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 SIT1Q9Y3P8 196 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 CDY1Q9Y6F8 540 aa13.63□□□□□ -0.23
CPSF3-204ENST00000489403 SMIM28A0A1B0GU29 152 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 I3L4J1 428 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 K7ERI5 159 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 EIF5BO60841 1220 aaKnown RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 GLULP15104 373 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 GRM5P41594 1212 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 BRCC3P46736 316 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 PEX3P56589 373 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 STARD6P59095 220 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 HMGN5P82970 282 aaKnown RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 SOX4Q06945 474 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 GNL2Q13823 731 aaKnown RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 UVSSAQ2YD98 709 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 XKR4Q5GH76 650 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 MTSS1LQ765P7 747 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 TAS1R3Q7RTX0 852 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 DAW1Q8N136 415 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 IGSF22Q8N9C0 903 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 ACO2Q99798 780 aaKnown RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 DAXXQ9UER7 740 aaPredicted RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 NOL7Q9UMY1 257 aaKnown RBP13.62□□□□□ -0.23
CPSF3-204ENST00000489403 BACE2Q9Y5Z0 518 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 R4GN57 208 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 FANCMQ8IYD8 2048 aa13.62□□□□□ -0.23
CPSF3-204ENST00000489403 CCDC169A6NNP5 214 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 E9PMD0 336 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 HIP1RO75146 1068 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 LRRN2O75325 713 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 NPTX2P47972 431 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 TOB1P50616 345 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 OSTNP61366 133 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PTGDRQ13258 359 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PDIA5Q14554 519 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 ZNF568Q3ZCX4 644 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PABPC1LQ4VXU2 614 aaKnown RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 ALKAL1Q6UXT8 129 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 ANKS3Q6ZW76 656 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 APBB1IPQ7Z5R6 666 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 NPAS3Q8IXF0 933 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 FAM184AQ8NB25 1140 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 ZMAT2Q96NC0 199 aaKnown RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 CCDC94Q9BW85 323 aaPredicted RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 TMEM134Q9H6X4 195 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PTPRHQ9HD43 1115 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 ARHGAP28Q9P2N2 729 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PCDHB6Q9Y5E3 794 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PDCD11Q14690 1871 aaKnown RBP13.61□□□□□ -0.23
CPSF3-204ENST00000489403 CITO14578 2027 aa13.61□□□□□ -0.23
CPSF3-204ENST00000489403 PATJQ8NI35 1801 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 PP2D1A8MPX8 630 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 PODXLO00592 558 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 ABLIM1O14639 778 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 TRAPPC3O43617 180 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 LMNAP02545 664 aaKnown RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 RHOP08100 348 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 SP9P0CG40 484 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 U2AF2P26368 475 aaKnown RBP eCLIP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 YARSP54577 528 aaKnown RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 ROR1Q01973 937 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 MAPK7Q13164 816 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 DMP1Q13316 513 aaPredicted RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 SNW1Q13573 536 aaKnown RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 MLF2Q15773 248 aaPredicted RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 RTL10Q7L3V2 364 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 C1orf210Q8IVY1 113 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 ING5Q8WYH8 240 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 SHDQ96IW2 340 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 ZSCAN31Q96LW9 406 aaPredicted RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 KXD1Q9BQD3 176 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 RUSC1Q9BVN2 902 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 TARS2Q9BW92 718 aaKnown RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 MRPL4Q9BYD3 311 aaKnown RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 RAB34Q9BZG1 259 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 SEMA4AQ9H3S1 761 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 TOPORSQ9NS56 1045 aaPredicted RBP13.6□□□□□ -0.23
CPSF3-204ENST00000489403 KCNH3Q9ULD8 1083 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 STK24Q9Y6E0 443 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 FAM186AA6NE01 2351 aa13.6□□□□□ -0.23
CPSF3-204ENST00000489403 PTPRZ1P23471 2315 aaPredicted RBP13.59□□□□□ -0.23
CPSF3-204ENST00000489403 KANSL1LA0AUZ9 987 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 WDR27A2RRH5 827 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 PROZP22891 400 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 CDC25AP30304 524 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 ID4P47928 161 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 PRKCQQ04759 706 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 IL17AQ16552 155 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 SLC5A9Q2M3M2 681 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 VARS2Q5ST30 1063 aaKnown RBP13.59□□□□□ -0.23
CPSF3-204ENST00000489403 SLC8B1Q6J4K2 584 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 RINT1Q6NUQ1 792 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 POTEHQ6S545 545 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 KCNK18Q7Z418 384 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 MAML2Q8IZL2 1156 aaPredicted RBP13.59□□□□□ -0.23
CPSF3-204ENST00000489403 KCNG4Q8TDN1 519 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 DRC1Q96MC2 740 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 KIF2CQ99661 725 aa13.59□□□□□ -0.23
CPSF3-204ENST00000489403 MMTAG2Q9BU76 263 aaKnown RBP13.59□□□□□ -0.23
CPSF3-204ENST00000489403 DDX23Q9BUQ8 820 aaKnown RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms