RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 CEP55Q53EZ4 464 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 BRINP3Q76B58 766 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 PRPF38AQ8NAV1 312 aaKnown RBP18.57■□□□□ 0.56
NPHP4-209ENST00000489180 RNF149Q8NC42 400 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 TMEM143Q96AN5 459 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 PODNQ7Z5L7 613 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 JAMLQ86YT9 394 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 NDUFAF2Q8N183 169 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 ERP27Q96DN0 273 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 MMTAG2Q9BU76 263 aaKnown RBP18.57■□□□□ 0.56
NPHP4-209ENST00000489180 COG4Q9H9E3 785 aa18.57■□□□□ 0.56
NPHP4-209ENST00000489180 SPATA31A3Q5VYP0 1347 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 GLI2P10070 1586 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 PSMD14O00487 310 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 KCNA2P16389 499 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 NAB2Q15742 525 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 RABL6Q3YEC7 729 aaPredicted RBP18.56■□□□□ 0.56
NPHP4-209ENST00000489180 RFWD2Q8NHY2 731 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 SPON2Q9BUD6 331 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 TAP1Q03518 808 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 TMA16Q96EY4 203 aaKnown RBP18.56■□□□□ 0.56
NPHP4-209ENST00000489180 NDFIP2Q9NV92 336 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 SOX11P35716 441 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 ACTR2P61160 394 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 GJB7Q6PEY0 223 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 SENP7Q9BQF6 1050 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 PCMTD2Q9NV79 361 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 ADCY10Q96PN6 1610 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 LOC102724159A0A0B4J2E5 919 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 PWP2Q15269 919 aaKnown RBP18.56■□□□□ 0.56
NPHP4-209ENST00000489180 DCAF4L1Q3SXM0 396 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 COBLL1Q53SF7 1204 aa18.56■□□□□ 0.56
NPHP4-209ENST00000489180 ITIH2P19823 946 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 SULT1E1P49888 294 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 SMG5Q9UPR3 1016 aaKnown RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 ARHGEF40Q8TER5 1519 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 ARHGAP10A1A4S6 786 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 SUPT3HO75486 399 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 KCNJ1P48048 391 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 TTLL4Q14679 1199 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 NAF1Q96HR8 494 aaKnown RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 CASS4Q9NQ75 786 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 PNMA3Q9UL41 463 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 COMTP21964 271 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 TMED8Q6PL24 325 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 RPAP3Q9H6T3 665 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 CHMP2BQ9UQN3 213 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 ZNF711Q9Y462 761 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 ABCC3O15438 1527 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 KYNUQ16719 465 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 RNF219Q5W0B1 726 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 SYDE1Q6ZW31 735 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 MDM1Q8TC05 714 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 EPB41L4AQ9HCS5 686 aaPredicted RBP18.55■□□□□ 0.56
NPHP4-209ENST00000489180 RAB6BQ9NRW1 208 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 MTMR4Q9NYA4 1195 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 DONSONQ9NYP3 566 aa18.55■□□□□ 0.56
NPHP4-209ENST00000489180 TMEM120BA0PK00 339 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 POLRMTO00411 1230 aaKnown RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 USP33Q8TEY7 942 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 C18orf8Q96DM3 657 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 ACAD9Q9H845 621 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 SENP1Q9P0U3 644 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 ZC3H7BQ9UGR2 993 aaKnown RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 STXBP3O00186 592 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 ZFXP17010 805 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 PSMC3IPQ9P2W1 217 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 TET3O43151 1660 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 PRKCBP05771 671 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 IRAK1P51617 712 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 CNGA3Q16281 694 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 TRPM8Q7Z2W7 1104 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 TEKT2Q9UIF3 430 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 POLR1AO95602 1720 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 F8W8V4 182 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 CDH16O75309 829 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 PLEKP08567 350 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 ENO3P13929 434 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 SNRNP35Q16560 246 aaKnown RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 EPC2Q52LR7 807 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 MMP19Q99542 508 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 JPH1Q9HDC5 661 aaPredicted RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 UVRAGQ9P2Y5 699 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 FAM47DPA6NHR8 397 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 MAN1A2O60476 641 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 GRAP2O75791 330 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 KLRC1P26715 233 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 AGBL2Q5U5Z8 902 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 NUP93Q8N1F7 819 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 USP38Q8NB14 1042 aa18.54■□□□□ 0.56
NPHP4-209ENST00000489180 ZC3H15Q8WU90 426 aaKnown RBP18.54■□□□□ 0.56
NPHP4-209ENST00000489180 HECW2Q9P2P5 1572 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 PPP1R3GB7ZBB8 358 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 IL10P22301 178 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 RECQLP46063 649 aaPredicted RBP18.53■□□□□ 0.56
NPHP4-209ENST00000489180 ITGA8P53708 1063 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 ZNF543Q08ER8 600 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 STX3Q13277 289 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 RMDN1Q96DB5 314 aa18.53■□□□□ 0.56
NPHP4-209ENST00000489180 ADNPQ9H2P0 1102 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms