RNA–Protein interactions for RNA: ENST00000488426.5

NELFE-209, Transcript of negative elongation factor complex member E, humanhuman

TSL 5

Gene NELFE, Length 1,855 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-209ENST00000488426 IQCEQ6IPM2 695 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 ZNF662Q6ZS27 426 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 ZNF410Q86VK4 478 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 LMBR1Q8WVP7 490 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 WNT8BQ93098 351 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 PRIMPOLQ96LW4 560 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 STK33Q9BYT3 514 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 INO80BQ9C086 356 aaPredicted RBP13.75□□□□□ -0.21
NELFE-209ENST00000488426 PDCL3Q9H2J4 239 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 DEF6Q9H4E7 631 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 IFT122Q9HBG6 1241 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 IL23AQ9NPF7 189 aa13.75□□□□□ -0.21
NELFE-209ENST00000488426 BZW2Q9Y6E2 419 aaKnown RBP13.75□□□□□ -0.21
NELFE-209ENST00000488426 MBLAC1A4D2B0 266 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 OGTO15294 1046 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 LCA5LO95447 670 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 EIF4A3P38919 411 aaKnown RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 KIF11P52732 1056 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 PPIGQ13427 754 aaKnown RBP eCLIP13.74□□□□□ -0.211e-7■■■■□ 22.6
NELFE-209ENST00000488426 PTGISQ16647 500 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 TDRD12Q587J7 1177 aaKnown RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 ATF7IP2Q5U623 682 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 MPZL3Q6UWV2 235 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 CRELD2Q6UXH1 353 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 DHX38Q92620 1227 aaKnown RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 FNBP1Q96RU3 617 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 SETD4Q9NVD3 440 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 RBAKQ9NYW8 714 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 REXO2Q9Y3B8 237 aaKnown RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 PAXBP1Q9Y5B6 917 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 A0A087WZ62 844 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 SMIM35A0A1B0GVV1 85 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 ABLIM1O14639 778 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 PLEKP08567 350 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 ANXA13P27216 316 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 PRKCIP41743 596 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 STAT1P42224 750 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 ACOT2P49753 483 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 SPA17Q15506 151 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 ASTE1Q2TB18 679 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 ARHGAP29Q52LW3 1261 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 DEFB128Q7Z7B8 93 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 KIAA0319LQ8IZA0 1049 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 KIF18AQ8NI77 898 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 FDXACB1Q9BRP7 624 aaPredicted RBP13.74□□□□□ -0.21
NELFE-209ENST00000488426 TCHPQ9BT92 498 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 PTPRHQ9HD43 1115 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 DNAJC12Q9UKB3 198 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 TNFSF13BQ9Y275 285 aa13.74□□□□□ -0.21
NELFE-209ENST00000488426 CNTNAP2Q9UHC6 1331 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 TTLL13PA6NNM8 815 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 F8VZ95 297 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 AKR1B10O60218 316 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 FAM189A1O60320 539 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 VTNP04004 478 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 DLATP10515 647 aaKnown RBP13.73□□□□□ -0.21
NELFE-209ENST00000488426 FERP16591 822 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 GPC3P51654 580 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 SMAD3P84022 425 aaKnown RBP13.73□□□□□ -0.21
NELFE-209ENST00000488426 KLHL30Q0D2K2 578 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 C15orf39Q6ZRI6 1047 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 SV2AQ7L0J3 742 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 IRF2BP2Q7Z5L9 587 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 SRGAP1Q7Z6B7 1085 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 BRSK2Q8IWQ3 736 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 FBXL13Q8NEE6 735 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 MINDY3Q9H8M7 445 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 GTF2IRD1Q9UHL9 959 aa13.73□□□□□ -0.21
NELFE-209ENST00000488426 AJAP1Q9UKB5 411 aaPredicted RBP13.73□□□□□ -0.21
NELFE-209ENST00000488426 ZC3H11AO75152 810 aaKnown RBP eCLIP13.72□□□□□ -0.21
NELFE-209ENST00000488426 FGBP02675 491 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 IQCF3P0C7M6 154 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 CCDC172P0C7W6 258 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 SOX5P35711 763 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 AP3M2P53677 418 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 ADAM17P78536 824 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 SURF1Q15526 300 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 ZNF568Q3ZCX4 644 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 PHLDB3Q6NSJ2 640 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 GJB7Q6PEY0 223 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 KIAA1328Q86T90 577 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 ZNF710Q8N1W2 664 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 TXLNBQ8N3L3 684 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 NLRP7Q8WX94 980 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 ZNF668Q96K58 619 aaPredicted RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 POP1Q99575 1024 aaKnown RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 CGRRF1Q99675 332 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 SEZ6LQ9BYH1 1024 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 HAUS4Q9H6D7 363 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 TOPORSQ9NS56 1045 aaPredicted RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 REV3LO60673 3130 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 GNAT1P11488 350 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 HARSP12081 509 aaKnown RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 HOXC8P31273 242 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 ARHGAP25P42331 645 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 VAV2P52735 878 aa13.72□□□□□ -0.21
NELFE-209ENST00000488426 POU5F1Q01860 360 aaKnown RBP13.72□□□□□ -0.21
NELFE-209ENST00000488426 DRAP1Q14919 205 aaPredicted RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 66 ms