RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 SPIRE2Q8WWL2 714 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 HVCN1Q96D96 273 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 RUNDC3BQ96NL0 473 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 ZNF317Q96PQ6 595 aaPredicted RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 INTS9Q9NV88 658 aaKnown RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 ASIC3Q9UHC3 531 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 MROH7Q68CQ1 1323 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 TP73O15350 636 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 STBD1O95210 358 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 KCNA3P22001 575 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 CHKAP35790 457 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 SPOPLQ6IQ16 392 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 TAS1R3Q7RTX0 852 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 CDC42EP4Q9H3Q1 356 aaKnown RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 AAASQ9NRG9 546 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 RNF146Q9NTX7 359 aa19.18■□□□□ 0.66
VIM-206ENST00000487938 SEPT9Q9UHD8 586 aaPredicted RBP19.18■□□□□ 0.66
VIM-206ENST00000487938 VWA5AO00534 786 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 GTF2H1P32780 548 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 IFNAR2P48551 515 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 MNAT1P51948 309 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 WNT7BP56706 349 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 ANKRD20A8PQ5CZ79 823 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 USP37Q86T82 979 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 VSIG10LQ86VR7 867 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 LRRC34Q8IZ02 419 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 TEPSINQ96N21 525 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 FAM118BQ9BPY3 351 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 HEMGNQ9BXL5 484 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 XPNPEP1Q9NQW7 623 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 CFHP08603 1231 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 CCND2P30279 289 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 ARMC9Q7Z3E5 817 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 SAMD3Q8N6K7 520 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 JPH2Q9BR39 696 aaPredicted RBP19.17■□□□□ 0.66
VIM-206ENST00000487938 VPS33BQ9H267 617 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 C1orf112Q9NSG2 853 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 SRCAPQ6ZRS2 3230 aa19.17■□□□□ 0.66
VIM-206ENST00000487938 FOXO6A8MYZ6 492 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 O00370 1275 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 TNNI1P19237 187 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 ACOT2P49753 483 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 VPS41P49754 854 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 GCNT1Q02742 428 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 DRP2Q13474 957 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 PWWP2AQ96N64 755 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 TMEM109Q9BVC6 243 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 PLVAPQ9BX97 442 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 MYPNQ86TC9 1320 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 EXOC3L1Q86VI1 746 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 PASD1Q8IV76 773 aa19.16■□□□□ 0.66
VIM-206ENST00000487938 R3HDM2Q9Y2K5 976 aaKnown RBP19.16■□□□□ 0.66
VIM-206ENST00000487938 RGS20O76081 388 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 VIMP08670 466 aaKnown RBP19.15■□□□□ 0.66
VIM-206ENST00000487938 BRDTQ58F21 947 aaPredicted RBP19.15■□□□□ 0.66
VIM-206ENST00000487938 POTEAQ6S8J7 498 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 CCDC50Q8IVM0 306 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 CCDC60Q8IWA6 550 aaPredicted RBP19.15■□□□□ 0.66
VIM-206ENST00000487938 CCDC197Q8NCU1 140 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 CEP89Q96ST8 783 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 POLR3FQ9H1D9 316 aaPredicted RBP19.15■□□□□ 0.66
VIM-206ENST00000487938 SLC40A1Q9NP59 571 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 PDLIM7Q9NR12 457 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 WHRNQ9P202 907 aa19.15■□□□□ 0.66
VIM-206ENST00000487938 HLA-DRAP01903 254 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 CREB1P16220 341 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 KCNA2P16389 499 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 GARTP22102 1010 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 SCTRP47872 440 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 LIG4P49917 911 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 ITGA8P53708 1063 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 NLRP11P59045 1033 aaKnown RBP19.14■□□□□ 0.66
VIM-206ENST00000487938 MTERF2Q49AM1 385 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 TNFAIP8L3Q5GJ75 292 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 TRMT10CQ7L0Y3 403 aaKnown RBP19.14■□□□□ 0.66
VIM-206ENST00000487938 MGARPQ8TDB4 240 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 CCT6BQ92526 530 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 ATP6V0A1Q93050 837 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 FNBP1Q96RU3 617 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 ELAC2Q9BQ52 826 aaKnown RBP19.14■□□□□ 0.66
VIM-206ENST00000487938 ACTR5Q9H9F9 607 aaPredicted RBP19.14■□□□□ 0.66
VIM-206ENST00000487938 C17orf75Q9HAS0 396 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 CYP26B1Q9NR63 512 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 KLC4Q9NSK0 619 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 RGS17Q9UGC6 210 aaPredicted RBP19.14■□□□□ 0.66
VIM-206ENST00000487938 PCDHB2Q9Y5E7 798 aa19.14■□□□□ 0.66
VIM-206ENST00000487938 DGAT1O75907 488 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 IVDP26440 423 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 NSFP46459 744 aaKnown RBP19.14■□□□□ 0.65
VIM-206ENST00000487938 PRKCEQ02156 737 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 LRRC14Q15048 493 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 KYNUQ16719 465 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 ZNF568Q3ZCX4 644 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 WDR44Q5JSH3 913 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 C15orf39Q6ZRI6 1047 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 ENOSF1Q7L5Y1 443 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 CROCCP2Q86T23 111 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 RDM1Q8NG50 284 aa19.14■□□□□ 0.65
VIM-206ENST00000487938 IPO4Q8TEX9 1081 aaKnown RBP19.14■□□□□ 0.65
VIM-206ENST00000487938 GPRASP2Q96D09 838 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms