RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RRP12Q5JTH9 1297 aaKnown RBP4.46□□□□□ -1.7
VPS50-216ENST00000484954 HECTD2Q5U5R9 776 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 TSHZ3Q63HK5 1081 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 ZNF529Q6P280 563 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 UBE3BQ7Z3V4 1068 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 ARHGEF19Q8IW93 802 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 RHOT2Q8IXI1 618 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 DDX55Q8NHQ9 600 aaKnown RBP eCLIP4.46□□□□□ -1.7
VPS50-216ENST00000484954 NRG4Q8WWG1 115 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 CCDC8Q9H0W5 538 aaPredicted RBP4.46□□□□□ -1.7
VPS50-216ENST00000484954 ATP8A1Q9Y2Q0 1164 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 FPGT-TNNI3KV9GXZ4 949 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 WASHC2AQ641Q2 1341 aa4.46□□□□□ -1.7
VPS50-216ENST00000484954 POLR2AP24928 1970 aaKnown RBP4.45□□□□□ -1.7
VPS50-216ENST00000484954 TRIM75PA6NK02 468 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 KRTAP29-1A8MX34 341 aaPredicted RBP4.45□□□□□ -1.7
VPS50-216ENST00000484954 DIRC3C9JPN6 131 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 B3GALT2O43825 422 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA12O60330 932 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 CFIP05156 583 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 ATP5JP18859 108 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 BMPR1AP36894 532 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 ATP8B2P98198 1209 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 OCA2Q04671 838 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 SCAPQ12770 1279 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 CLUL1Q15846 466 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 ABCB5Q2M3G0 1257 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 B3GNTL1Q67FW5 361 aaPredicted RBP4.45□□□□□ -1.7
VPS50-216ENST00000484954 CMTR2Q8IYT2 770 aaKnown RBP4.45□□□□□ -1.7
VPS50-216ENST00000484954 JADE3Q92613 823 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 SPC25Q9HBM1 224 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 SYBUQ9NX95 663 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 USP25Q9UHP3 1055 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 INTUQ9ULD6 942 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 ZBTB21Q9ULJ3 1066 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA9Q9Y5G4 932 aaKnown RBP4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA8Q9Y5G5 932 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA7Q9Y5G6 932 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA6Q9Y5G7 932 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 PCDHGA3Q9Y5H0 932 aa4.45□□□□□ -1.7
VPS50-216ENST00000484954 FZD9O00144 591 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 GPR32O75388 356 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 ENDOD1O94919 500 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 NUDT3O95989 172 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 IL2RBP14784 551 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 C5AR1P21730 350 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 EVA1CP58658 441 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 GUCY1B3Q02153 619 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 FOXI1Q12951 378 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 MTMR1Q13613 665 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 UBXN2BQ14CS0 331 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 OTUD7BQ6GQQ9 843 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 PGM2L1Q6PCE3 622 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 SEM1Q6ZVN7 128 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 BHLHA9Q7RTU4 235 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 MAPKAPK5Q8IW41 473 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 DCBLD1Q8N8Z6 715 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 C1orf162Q8NEQ5 155 aaPredicted RBP4.44□□□□□ -1.7
VPS50-216ENST00000484954 FUBP3Q96I24 572 aaKnown RBP eCLIP4.44□□□□□ -1.7
VPS50-216ENST00000484954 PUS7LQ9H0K6 701 aaKnown RBP4.44□□□□□ -1.7
VPS50-216ENST00000484954 MOCS1Q9NZB8 636 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 MCM8Q9UJA3 840 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 PACSIN3Q9UKS6 424 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 TRHDEQ9UKU6 1024 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 ATP11BQ9Y2G3 1177 aa4.44□□□□□ -1.7
VPS50-216ENST00000484954 EPN1Q9Y6I3 576 aaPredicted RBP4.44□□□□□ -1.7
VPS50-216ENST00000484954 A0A1B0GTW7 788 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 TCRBV7S2A1N4TA0A589 114 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 NDUFS2O75306 463 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 KATNA1O75449 491 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 ZFPL1O95159 310 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 POMCP01189 267 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 SPATA31D3P0C874 917 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 FBLP22087 321 aaKnown RBP4.43□□□□□ -1.7
VPS50-216ENST00000484954 FGFR4P22455 802 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 SLC6A4P31645 630 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 ADRA1BP35368 520 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 PLA2G5P39877 138 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 KRTAP10-11P60412 298 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 HSD11B2P80365 405 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 AMPD3Q01432 767 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 TARDBPQ13148 414 aaKnown RBP eCLIP4.43□□□□□ -1.7
VPS50-216ENST00000484954 FAM50AQ14320 339 aaKnown RBP4.43□□□□□ -1.7
VPS50-216ENST00000484954 FAM180AQ6UWF9 173 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 SPATA31D4Q6ZUB0 917 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 RHOT1Q8IXI2 618 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 AMOTL1Q8IY63 956 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 DRC7Q8IY82 874 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 TMEM132CQ8N3T6 1108 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 CASKIN2Q8WXE0 1202 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 NACC2Q96BF6 587 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 PRDM13Q9H4Q3 707 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 SYNPO2LQ9H987 977 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 CYP4F11Q9HBI6 524 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 TMEM140Q9NV12 185 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 PCDHA13Q9Y5I0 950 aa4.43□□□□□ -1.7
VPS50-216ENST00000484954 MYBBP1AQ9BQG0 1328 aaKnown RBP4.43□□□□□ -1.7
VPS50-216ENST00000484954 CADPSQ9ULU8 1353 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 PIPSLA2A3N6 862 aa4.42□□□□□ -1.7
VPS50-216ENST00000484954 FAM171A2A8MVW0 826 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms