RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 GRPEL1Q9HAV7 217 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 PARVGQ9HBI0 331 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 POLD4Q9HCU8 107 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 SLC39A2Q9NP94 309 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 GPRC5CQ9NQ84 441 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 TBC1D7Q9P0N9 293 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 ZNF215Q9UL58 517 aaPredicted RBP7.33□□□□□ -1.24
USP48-208ENST00000479177 EVPLQ92817 2033 aa7.33□□□□□ -1.24
USP48-208ENST00000479177 UBE4BO95155 1302 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 CENPFP49454 3210 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 TRIP12Q14669 1992 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 A0A0A0MRY4 1105 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 IGKV6-21A0A0C4DH24 114 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 HAS3O00219 553 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 PSMA7O14818 248 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 EREGO14944 169 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 EIF3DO15371 548 aaKnown RBP eCLIP7.32□□□□□ -1.24
USP48-208ENST00000479177 MAFO75444 373 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 KIF4AO95239 1232 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 C22orf31O95567 290 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 PGK1P00558 417 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 MYL3P08590 195 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 C6orf222P0C671 652 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 MYBP10242 640 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 HSPA8P11142 646 aaKnown RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 CES1P23141 567 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 CST5P28325 142 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 CNGA1P29973 690 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 PPP1R2P41236 205 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 MRE11P49959 708 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 POLGP54098 1239 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 SOX10P56693 466 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 RTP1P59025 263 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 PURAQ00577 322 aaKnown RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 PPFIA1Q13136 1202 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 NCAPHQ15003 741 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 LRRC41Q15345 812 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 BMT2Q1RMZ1 405 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 ZNF484Q5JVG2 852 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 ODR4Q5SWX8 454 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 KLHL10Q6JEL2 608 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 FAM178BQ8IXR5 827 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 MYCT1Q8N699 235 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 TTC16Q8NEE8 873 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 ENOX1Q8TC92 643 aaKnown RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 ASAP3Q8TDY4 903 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 SCFD1Q8WVM8 642 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 TRAPPC12Q8WVT3 735 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 NELFBQ8WX92 580 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 SLC7A3Q8WY07 619 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 BSNDQ8WZ55 320 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 HHIPQ96QV1 700 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 POLR3FQ9H1D9 316 aaPredicted RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 HSD3B7Q9H2F3 369 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 RNPEPQ9H4A4 650 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 XPNPEP3Q9NQH7 507 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 DDX20Q9UHI6 824 aaKnown RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 RWDD2AQ9UIY3 292 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 MAPK8IP1Q9UQF2 711 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 PTPN22Q9Y2R2 807 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 KIAA0100Q14667 2235 aaKnown RBP7.32□□□□□ -1.24
USP48-208ENST00000479177 ZMYM2Q9UBW7 1377 aa7.32□□□□□ -1.24
USP48-208ENST00000479177 ADGRA3Q8IWK6 1321 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 TRIM49BA6NDI0 452 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 K7ENM7 598 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 GAS2O43903 313 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 MSCO60682 206 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 KPNA6O60684 536 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 GCNT3O95395 438 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 RPLP1P05386 114 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 H2AFB1P0C5Y9 115 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 H2AFB2P0C5Z0 115 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SMIM10L2AP0DMW4 78 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SMIM10L2BP0DMW5 78 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 INSRRP14616 1297 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SELPP16109 830 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 GLRA2P23416 452 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 CCNE1P24864 410 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 NMT1P30419 496 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 HOXC8P31273 242 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 ARL2P36404 184 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 PMS1P54277 932 aaKnown RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 NCKAP1LP55160 1127 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 STX17P56962 302 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 DMP1Q13316 513 aaPredicted RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 ALCAMQ13740 583 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 UVSSAQ2YD98 709 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 ZCWPW2Q504Y3 356 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SPATA1Q5VX52 437 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 CCSAPQ6IQ19 270 aaPredicted RBP7.31□□□□□ -1.24
USP48-208ENST00000479177 TTI2Q6NXR4 508 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 FOXR2Q6PJQ5 311 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 MAEAQ7L5Y9 396 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 EXOC8Q8IYI6 725 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 MYOCDQ8IZQ8 938 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 LINC01465Q8N7H1 131 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 CEP120Q8N960 986 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 KLHDC9Q8NEP7 349 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 SH3TC2Q8TF17 1288 aa7.31□□□□□ -1.24
USP48-208ENST00000479177 KCNN1Q92952 543 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms