RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 LRRN4CLQ8ND94 238 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 RASGRP4Q8TDF6 673 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 DNAJB3Q8WWF6 145 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 ARNTL2Q8WYA1 636 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 TRIM56Q9BRZ2 755 aaKnown RBP7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 C22orf23Q9BZE7 217 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 CERS4Q9HA82 394 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 TBC1D22BQ9NU19 505 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 INSL6Q9Y581 213 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 PCDHA2Q9Y5H9 948 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 TTC3P53804 2025 aa7.69□□□□□ -1.18
CCDC88A-213ENST00000476903 COL4A6Q14031 1691 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 LCHNA4D1U4 455 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 LINC01553A4QN01 128 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 EPOPA6NHQ4 379 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 RFXAPO00287 272 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 HBP1O60381 514 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 EIF4EBP3O60516 100 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 PHACTR2O75167 634 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 GHRP10912 638 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 PCSK2P16519 638 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 POU3F3P20264 500 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 CD96P40200 585 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 ASPAP45381 313 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 MRPS6P82932 125 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 HTRA4P83105 476 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 PCDH1Q08174 1060 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 POU4F3Q15319 338 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 ANKRD1Q15327 319 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 CCDC85BQ15834 202 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 GALNT17Q6IS24 598 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 MTHFD1LQ6UB35 978 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 ABHD15Q6UXT9 468 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 TSHZ1Q6ZSZ6 1077 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 KSR1Q8IVT5 923 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 CCDC60Q8IWA6 550 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 CKAP2LQ8IYA6 745 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 SMAP1Q8IYB5 467 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 ATP8B4Q8TF62 1192 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 TGS1Q96RS0 853 aaKnown RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 YME1L1Q96TA2 773 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 KRTAP17-1Q9BYP8 105 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 OSBPL7Q9BZF2 842 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM49AQ9H0Q0 323 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 SLKQ9H2G2 1235 aaPredicted RBP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 ZNF302Q9NR11 478 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 THEGQ9P2T0 379 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 PCDHA4Q9UN74 947 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 CDY2AQ9Y6F7 541 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 COL1A2P08123 1366 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 VCANP13611 3396 aa7.68□□□□□ -1.18
CCDC88A-213ENST00000476903 SMIM35A0A1B0GVV1 85 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 XBP1P17861 261 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 KLRC1P26715 233 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 EIF1AXP47813 144 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 ERVK-21P61565 698 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 SCRN1Q12765 414 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 LPIN1Q14693 890 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 FBXO47Q5MNV8 452 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 SWSAP1Q6NVH7 229 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 C1QL4Q86Z23 238 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 BLIDQ8IZY5 108 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 NME8Q8N427 588 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 DAGLBQ8NCG7 672 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 TBCKQ8TEA7 893 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 GDPD5Q8WTR4 605 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 TRAPPC12Q8WVT3 735 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 ATXN2LQ8WWM7 1075 aaKnown RBP7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 TOP1MTQ969P6 601 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 LENG9Q96B70 501 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 ZBTB10Q96DT7 871 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 UIMC1Q96RL1 719 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 POLIQ9UNA4 740 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 SAMM50Q9Y512 469 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 PCDHA10Q9Y5I2 948 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 TRPV2Q9Y5S1 764 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 MTCH2Q9Y6C9 303 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 SQORQ9Y6N5 450 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 STK36Q9NRP7 1315 aa7.67□□□□□ -1.18
CCDC88A-213ENST00000476903 TCF20Q9UGU0 1960 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 A0A096LPE4 126 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 A0A1W2PPZ6 126 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 RBAK-RBAKDNI3L0D1 243 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 MSH4O15457 936 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 PFKFB2O60825 505 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 GAS7O60861 476 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 CYP11A1P05108 521 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 SFNP31947 248 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 JAK3P52333 1124 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 MRPS5P82675 430 aaKnown RBP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 TMEM62Q0P6H9 643 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 GRB10Q13322 594 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 NONOQ15233 471 aaKnown RBP eCLIP7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 Q4G0T1 1027 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 ZNF484Q5JVG2 852 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 LRCH2Q5VUJ6 765 aa7.66□□□□□ -1.18
CCDC88A-213ENST00000476903 MOXD1Q6UVY6 613 aa7.66□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms