RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 KARSQ15046 597 aaKnown RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 PSMD5Q16401 504 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 SLC10A6Q3KNW5 377 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 SEZ6Q53EL9 994 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 FAM173BQ6P4H8 233 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 ZPBP2Q6X784 338 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 PDZRN4Q6ZMN7 1036 aaPredicted RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 OTOP3Q7RTS5 596 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 UBALD2Q8IYN6 164 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 SMG7Q92540 1137 aaKnown RBP20.34■□□□□ 0.85
COL7A1-209ENST00000474432 UROC1Q96N76 676 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 FIZ1Q96SL8 496 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 KCNH6Q9H252 994 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 ZDHHC7Q9NXF8 308 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 CNTN3Q9P232 1028 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 DPP7Q9UHL4 492 aa20.34■□□□□ 0.85
COL7A1-209ENST00000474432 PIEZO1Q92508 2521 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 NOTCH4Q99466 2003 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 I3L4J1 428 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 SYT1P21579 422 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 BRCC3P46736 316 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 ZNF131P52739 623 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 VCPP55072 806 aaKnown RBP20.33■□□□□ 0.85
COL7A1-209ENST00000474432 ELAVL2Q12926 359 aaKnown RBP20.33■□□□□ 0.85
COL7A1-209ENST00000474432 MCM6Q14566 821 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 GPBP1Q86WP2 473 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 RAD54LQ92698 747 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 ACAP3Q96P50 834 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 MYADMQ96S97 322 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 TCHPQ9BT92 498 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 PRKD2Q9BZL6 878 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 TOPORSQ9NS56 1045 aaPredicted RBP20.33■□□□□ 0.85
COL7A1-209ENST00000474432 ODF2LQ9ULJ1 636 aa20.33■□□□□ 0.85
COL7A1-209ENST00000474432 CLUHO75153 1309 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 TKTP29401 623 aaKnown RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 SMTNP53814 917 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 YARSP54577 528 aaKnown RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 MCL1Q07820 350 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 STRN3Q13033 797 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 RAB33AQ14088 237 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 HAUS6Q7Z4H7 955 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 TMEM130Q8N3G9 435 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 PRSS33Q8NF86 280 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 C18orf25Q96B23 403 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 ACSF2Q96CM8 615 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 CALML4Q96GE6 196 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 DDX27Q96GQ7 796 aaKnown RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 EPSTI1Q96J88 318 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 CCSER1Q9C0I3 900 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 LARSQ9P2J5 1176 aaKnown RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 MTRRQ9UBK8 725 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 KCNG1Q9UIX4 513 aa20.32■□□□□ 0.84
COL7A1-209ENST00000474432 FBXO2Q9UK22 296 aaPredicted RBP20.32■□□□□ 0.84
COL7A1-209ENST00000474432 FAM189A1O60320 539 aa20.31■□□□□ 0.84
COL7A1-209ENST00000474432 HARSP12081 509 aaKnown RBP20.31■□□□□ 0.84
COL7A1-209ENST00000474432 NHLH1Q02575 133 aa20.31■□□□□ 0.84
COL7A1-209ENST00000474432 DHX8Q14562 1220 aaKnown RBP20.31■□□□□ 0.84
COL7A1-209ENST00000474432 NOLC1Q14978 699 aaKnown RBP eCLIP20.31■□□□□ 0.84
COL7A1-209ENST00000474432 KCNK12Q9HB15 430 aa20.31■□□□□ 0.84
COL7A1-209ENST00000474432 ANKFY1Q9P2R3 1169 aa20.31■□□□□ 0.84
COL7A1-209ENST00000474432 PODXLO00592 558 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 PDCP20941 246 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 OR1D2P34982 312 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 SPECC1Q5M775 1068 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 ELMSAN1Q6PJG2 1045 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 INTS4Q96HW7 963 aaKnown RBP20.3■□□□□ 0.84
COL7A1-209ENST00000474432 SLC38A7Q9NVC3 462 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 EPS15L1Q9UBC2 864 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 MTMR6Q9Y217 621 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 BACE2Q9Y5Z0 518 aa20.3■□□□□ 0.84
COL7A1-209ENST00000474432 CACNA1HO95180 2353 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 CLDN3O15551 220 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 TBC1D4O60343 1298 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 PIGRP01833 764 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 MARCKSP29966 332 aaPredicted RBP20.29■□□□□ 0.84
COL7A1-209ENST00000474432 AVPR2P30518 371 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 TNFSF9P41273 254 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 ZBTB6Q15916 424 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 ZBTB41Q5SVQ8 909 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 SLC39A4Q6P5W5 647 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 PDXDC1Q6P996 788 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 SUGP1Q8IWZ8 645 aaKnown RBP20.29■□□□□ 0.84
COL7A1-209ENST00000474432 RSAD2Q8WXG1 361 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 TBX20Q9UMR3 447 aa20.29■□□□□ 0.84
COL7A1-209ENST00000474432 SRPRBQ9Y5M8 271 aaKnown RBP20.29■□□□□ 0.84
COL7A1-209ENST00000474432 TTC26A0AVF1 554 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 C8AP07357 584 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 CXCL8P10145 99 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 DDIT3P35638 169 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 NTHL1P78549 312 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 TCF15Q12870 199 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 TDGQ13569 410 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 MRPL58Q14197 206 aaKnown RBP20.28■□□□□ 0.84
COL7A1-209ENST00000474432 MYCT1Q8N699 235 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 LARP4BQ92615 738 aaKnown RBP20.28■□□□□ 0.84
COL7A1-209ENST00000474432 CLIC6Q96NY7 704 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 PIDD1Q9HB75 910 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 PARVGQ9HBI0 331 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 TUBGCP4Q9UGJ1 667 aa20.28■□□□□ 0.84
COL7A1-209ENST00000474432 CDY1Q9Y6F8 540 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms