RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 HERC4Q5GLZ8 1057 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-218ENST00000470942 KANK3Q6NY19 840 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 PRSS55Q6UWB4 352 aaPredicted RBP17.13■□□□□ 0.33
HDAC6-218ENST00000470942 ZNF720Q7Z2F6 126 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 PALB2Q86YC2 1186 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 STAMQ92783 540 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 DHX58Q96C10 678 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 RPGRIP1Q96KN7 1286 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 TTPALQ9BTX7 342 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 MSTO1Q9BUK6 570 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 ADAM7Q9H2U9 754 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 MRPL44Q9H9J2 332 aaKnown RBP17.13■□□□□ 0.33
HDAC6-218ENST00000470942 CNTN3Q9P232 1028 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 CDH22Q9UJ99 828 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 MUC3AQ02505 3323 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 VWA8A3KMH1 1905 aa17.13■□□□□ 0.33
HDAC6-218ENST00000470942 GLUD1P00367 558 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 WEE2P0C1S8 567 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 MYBP10242 640 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 RPL17P18621 184 aaKnown RBP17.12■□□□□ 0.33
HDAC6-218ENST00000470942 TNFSF9P41273 254 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 MTHFRP42898 656 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 CREMQ03060 361 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 KYAT1Q16773 422 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 UPP1Q16831 310 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 RTP2Q5QGT7 225 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 SHC4Q6S5L8 630 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 TMC5Q6UXY8 1006 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 MAP4K3Q8IVH8 894 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 GPR65Q8IYL9 337 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 C18orf25Q96B23 403 aaPredicted RBP17.12■□□□□ 0.33
HDAC6-218ENST00000470942 DDX27Q96GQ7 796 aaKnown RBP17.12■□□□□ 0.33
HDAC6-218ENST00000470942 RIPOR3Q96MK2 946 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 LRRC27Q9C0I9 530 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 ST6GALNAC4Q9H4F1 302 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 MAN1C1Q9NR34 630 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 PANK4Q9NVE7 773 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 FNIP2Q9P278 1114 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 SEL1LQ9UBV2 794 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 PCDHA7Q9UN72 937 aa17.12■□□□□ 0.33
HDAC6-218ENST00000470942 ANKRD63C9JTQ0 380 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 TMEM189-UBE2V1I3L0A0 370 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 PODXLO00592 558 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 OGTO15294 1046 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 MEFVO15553 781 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-218ENST00000470942 TRAPPC3O43617 180 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 GCNT3O95395 438 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 SPATA31D3P0C874 917 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 IGFBP6P24592 240 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-218ENST00000470942 PPP2R3AQ06190 1150 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 SPAG1Q07617 926 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 PSMD5Q16401 504 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 ATAT1Q5SQI0 421 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 AXDND1Q5T1B0 1012 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-218ENST00000470942 SLC39A4Q6P5W5 647 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 ELMSAN1Q6PJG2 1045 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.11■□□□□ 0.33
HDAC6-218ENST00000470942 SPATA31D4Q6ZUB0 917 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 CCDC65Q8IXS2 484 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 IQUBQ8NA54 791 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 HVCN1Q96D96 273 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 FAM212AQ96EL1 285 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 NECTIN4Q96NY8 510 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 TNMDQ9H2S6 317 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 CUEDC2Q9H467 287 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 SFXN1Q9H9B4 322 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 RPF1Q9H9Y2 349 aaKnown RBP17.11■□□□□ 0.33
HDAC6-218ENST00000470942 PLEKHA5Q9HAU0 1116 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 FAM13BQ9NYF5 915 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 DPP7Q9UHL4 492 aa17.11■□□□□ 0.33
HDAC6-218ENST00000470942 A0A0B4J269 797 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 LACTBL1A8MY62 500 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 LOC730098B7Z3J9 87 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 PI4K2BG5E9Z4 385 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 I3L4J1 428 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 ALADP13716 330 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 SP100P23497 879 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-218ENST00000470942 RPL9P32969 192 aaKnown RBP17.1■□□□□ 0.33
HDAC6-218ENST00000470942 BRCC3P46736 316 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 AMPD3Q01432 767 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 BECN1Q14457 450 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 E2F4Q16254 413 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 ZBTB41Q5SVQ8 909 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 ADALQ6DHV7 355 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 SLFN12LQ6IEE8 588 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 PDXDC1Q6P996 788 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 CD300LGQ6UXG3 332 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 RNF135Q8IUD6 432 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 C3orf58Q8NDZ4 430 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 LNX1Q8TBB1 728 aaPredicted RBP17.1■□□□□ 0.33
HDAC6-218ENST00000470942 PIK3R5Q8WYR1 880 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 KIF12Q96FN5 646 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 ACCSQ96QU6 501 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 C1QTNF1Q9BXJ1 281 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 TSHZ2Q9NRE2 1034 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 RCOR1Q9UKL0 485 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 EXOC7Q9UPT5 735 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 ZDHHC9Q9Y397 364 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 NUB1Q9Y5A7 615 aa17.1■□□□□ 0.33
HDAC6-218ENST00000470942 PCDHB13Q9Y5F0 798 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms