RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 LRRIQ3A6PVS8 624 aaPredicted RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 MEIS3P2A8K0S8 358 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 RNF225M0QZC1 329 aaPredicted RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 MAP3K7O43318 606 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 OFD1O75665 1012 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ADCY5O95622 1261 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 SERPINC1P01008 464 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 EPB41P11171 864 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 CSF2RAP15509 400 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 RAG1P15918 1043 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ATF7P17544 494 aaPredicted RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 AKAP5P24588 427 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 GTF2H1P32780 548 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 MATR3P43243 847 aaKnown RBP eCLIP6.46□□□□□ -1.38
USP39-213ENST00000467885 MTIF2P46199 727 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 ZNF75DP51815 510 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 EPHB4P54760 987 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 SPAG1Q07617 926 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 BFSP1Q12934 665 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 PAK2Q13177 524 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 NOLC1Q14978 699 aaKnown RBP eCLIP6.46□□□□□ -1.38
USP39-213ENST00000467885 MAN2A1Q16706 1144 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 KYAT1Q16773 422 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 PTPN21Q16825 1174 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 DCAF4L1Q3SXM0 396 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ZNF568Q3ZCX4 644 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.46□□□□□ -1.38
USP39-213ENST00000467885 INTS8Q75QN2 995 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 SV2AQ7L0J3 742 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ECHDC2Q86YB7 292 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 BRSK2Q8IWQ3 736 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 EHBP1Q8NDI1 1231 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 OR5B17Q8NGF7 314 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 SEPT8Q92599 483 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 CCDC127Q96BQ5 260 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 FAM84AQ96KN4 292 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ZMAT2Q96NC0 199 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 FTHL17Q9BXU8 183 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 TMEM117Q9H0C3 514 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 RPF1Q9H9Y2 349 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 FAM105AQ9NUU6 356 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 RNF19AQ9NV58 838 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 TAB2Q9NYJ8 693 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 ANKFY1Q9P2R3 1169 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 MAGEC2Q9UBF1 373 aaPredicted RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 PIN4Q9Y237 131 aaKnown RBP6.46□□□□□ -1.38
USP39-213ENST00000467885 COQ4Q9Y3A0 265 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 UTP18Q9Y5J1 556 aaKnown RBP eCLIP6.46□□□□□ -1.38
USP39-213ENST00000467885 PTPRJQ12913 1337 aa6.46□□□□□ -1.38
USP39-213ENST00000467885 LGALS16A8MUM7 142 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 SMAPO00193 183 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 NRG2O14511 850 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 INPPL1O15357 1258 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 NOL4O94818 638 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 VNN1O95497 513 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 AFPP02771 609 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 HARSP12081 509 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 ITGA4P13612 1032 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 KRT13P13646 458 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 KCNE1P15382 129 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 SLC9A1P19634 815 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 IGFBP6P24592 240 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 PON1P27169 355 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 RFC2P35250 354 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 GCLMP48507 274 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 FMO5P49326 533 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 TPM4P67936 248 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 UBXN1Q04323 297 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 PPP2R3AQ06190 1150 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 TBX2Q13207 712 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 IKBKEQ14164 716 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 SURF1Q15526 300 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 NAB2Q15742 525 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 DUOXA2Q1HG44 320 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CCDC40Q4G0X9 1142 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CBWD6Q4V339 395 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CBWD3Q5JTY5 395 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CBWD5Q5RIA9 395 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 TWF2Q6IBS0 349 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 TRAPPC11Q7Z392 1133 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 DEFB128Q7Z7B8 93 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CD302Q8IX05 232 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 RPUSD2Q8IZ73 545 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 TMEM130Q8N3G9 435 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 SEMA4DQ92854 862 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 APBB2Q92870 758 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 BADQ92934 168 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 LPPQ93052 612 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 MRFAP1L1Q96HT8 127 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 ERGIC2Q96RQ1 377 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 TSPAN18Q96SJ8 248 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 ADPGKQ9BRR6 497 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 CCDC94Q9BW85 323 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 TRIM5Q9C035 493 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 NXF3Q9H4D5 531 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 ELAC1Q9H777 363 aaKnown RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 TOPORSQ9NS56 1045 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 RBAKQ9NYW8 714 aaPredicted RBP6.45□□□□□ -1.38
USP39-213ENST00000467885 KLK14Q9P0G3 267 aa6.45□□□□□ -1.38
USP39-213ENST00000467885 SIK3Q9Y2K2 1263 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms