RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 MIA3Q5JRA6 1907 aa23.13■■□□□ 1.29
COL9A3-207ENST00000467819 SPTBN4Q9H254 2564 aa23.13■■□□□ 1.29
COL9A3-207ENST00000467819 PRR23AA6NEV1 266 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 XYLBO75191 536 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 TKTP29401 623 aaKnown RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 GRM5P41594 1212 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 BRCC3P46736 316 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 YARSP54577 528 aaKnown RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 RAB33AQ14088 237 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 ANGPT1Q15389 498 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 ZRSR1Q15695 479 aaKnown RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 IL17AQ16552 155 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 UPP1Q16831 310 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 AXDND1Q5T1B0 1012 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 KCNK18Q7Z418 384 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 C3orf58Q8NDZ4 430 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 TARS2Q9BW92 718 aaKnown RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 MRPL4Q9BYD3 311 aaKnown RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 TBC1D17Q9HA65 648 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 KMT5AQ9NQR1 393 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 TOPORSQ9NS56 1045 aaPredicted RBP23.12■■□□□ 1.29
COL9A3-207ENST00000467819 CDH7Q9ULB5 785 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 CDY1Q9Y6F8 540 aa23.12■■□□□ 1.29
COL9A3-207ENST00000467819 SMIM28A0A1B0GU29 152 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 LAD1O00515 517 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 HOXA9P31269 272 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 SOX4Q06945 474 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 MCTP1Q6DN14 999 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 RINT1Q6NUQ1 792 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 CD300LGQ6UXG3 332 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 RSPO2Q6UXX9 243 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 DTHD1Q6ZMT9 781 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 TAS1R3Q7RTX0 852 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 FGF14Q92915 247 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 DDX27Q96GQ7 796 aaKnown RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 DRC1Q96MC2 740 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 TMEM134Q9H6X4 195 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 EIF4ENIF1Q9NRA8 985 aaKnown RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 ARHGAP28Q9P2N2 729 aa23.11■■□□□ 1.29
COL9A3-207ENST00000467819 DAXXQ9UER7 740 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 ZFP37Q9Y6Q3 630 aaPredicted RBP23.11■■□□□ 1.29
COL9A3-207ENST00000467819 TRAPPC3O43617 180 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 HARSP12081 509 aaKnown RBP23.1■■□□□ 1.29
COL9A3-207ENST00000467819 MAPK7Q13164 816 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 C8orf34Q49A92 452 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 PARM1Q6UWI2 310 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 ITFG1Q8TB96 612 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 TCHPQ9BT92 498 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 MMTAG2Q9BU76 263 aaKnown RBP23.1■■□□□ 1.29
COL9A3-207ENST00000467819 RPP25Q9BUL9 199 aaKnown RBP23.1■■□□□ 1.29
COL9A3-207ENST00000467819 PTPRHQ9HD43 1115 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 ARHGEF3Q9NR81 526 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 HCFC1R1Q9NWW0 138 aa23.1■■□□□ 1.29
COL9A3-207ENST00000467819 SFI1A8K8P3 1242 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 SLC16A4O15374 487 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 PRPHP41219 470 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 RAD51AP2Q09MP3 1159 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 ANKS3Q6ZW76 656 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 C1orf186Q6ZWK4 172 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 FGF13Q92913 245 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 NKD2Q969F2 451 aaPredicted RBP23.09■■□□□ 1.29
COL9A3-207ENST00000467819 SNX27Q96L92 541 aa23.09■■□□□ 1.29
COL9A3-207ENST00000467819 MCF2P10911 925 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 UVSSAQ2YD98 709 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 SPECC1Q5M775 1068 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 MPZL3Q6UWV2 235 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 ALKAL1Q6UXT8 129 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 ZMAT2Q96NC0 199 aaKnown RBP23.08■■□□□ 1.29
COL9A3-207ENST00000467819 SLC2A4RGQ9NR83 387 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 SLC38A7Q9NVC3 462 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 KIF3AQ9Y496 699 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 RBM19Q9Y4C8 960 aaKnown RBP23.08■■□□□ 1.29
COL9A3-207ENST00000467819 BACE2Q9Y5Z0 518 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 COL4A3Q01955 1670 aa23.08■■□□□ 1.29
COL9A3-207ENST00000467819 PODXLO00592 558 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 DCNP07585 359 aaKnown RBP23.07■■□□□ 1.28
COL9A3-207ENST00000467819 GPC5P78333 572 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 PABPC1LQ4VXU2 614 aaKnown RBP23.07■■□□□ 1.28
COL9A3-207ENST00000467819 XKR4Q5GH76 650 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 MTSS1LQ765P7 747 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 ING5Q8WYH8 240 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 ZBTB45Q96K62 511 aaPredicted RBP23.07■■□□□ 1.28
COL9A3-207ENST00000467819 ACAP3Q96P50 834 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 PLIN2Q99541 437 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 C17orf75Q9HAS0 396 aa23.07■■□□□ 1.28
COL9A3-207ENST00000467819 DNMT3BQ9UBC3 853 aaKnown RBP23.07■■□□□ 1.28
COL9A3-207ENST00000467819 WDR87Q6ZQQ6 2873 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 GVINP1Q7Z2Y8 2422 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 ABLIM1O14639 778 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 POU2F2P09086 479 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 PROZP22891 400 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 VARS2Q5ST30 1063 aaKnown RBP23.06■■□□□ 1.28
COL9A3-207ENST00000467819 PHLDB3Q6NSJ2 640 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 C18orf25Q96B23 403 aaPredicted RBP23.06■■□□□ 1.28
COL9A3-207ENST00000467819 ANKFY1Q9P2R3 1169 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 CACNA1IQ9P0X4 2223 aa23.06■■□□□ 1.28
COL9A3-207ENST00000467819 GUCY2CP25092 1073 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 ARPP19P56211 112 aa23.05■■□□□ 1.28
COL9A3-207ENST00000467819 ATP2C1P98194 919 aaPredicted RBP23.05■■□□□ 1.28
COL9A3-207ENST00000467819 ROR1Q01973 937 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms