RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SMCHD1A6NHR9 2005 aa8.49□□□□□ -1.05
USP54-208ENST00000461520 LOC102724159A0A0B4J2E5 919 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 A0A0U1RQG5 324 aaPredicted RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 ARVCFO00192 962 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 HIP1O00291 1037 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 ZNF213O14771 459 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 CTAGE5O15320 804 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 IGHDP01880 384 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SNHG28P0DPA3 235 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 PDHBP11177 359 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 CD247P20963 164 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 ENDOUP21128 410 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 VIPR1P32241 457 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SLC16A2P36021 539 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SNAP25P60880 206 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 HAND2P61296 217 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SMAD3P84022 425 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 FPGSQ05932 587 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 PWP2Q15269 919 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 MUM1L1Q5H9M0 696 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SYDE2Q5VT97 1194 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 CWF19L1Q69YN2 538 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 IQSEC1Q6DN90 963 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 NSMFQ6X4W1 530 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 DGKHQ86XP1 1220 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 HOMEZQ8IX15 550 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 MORC4Q8TE76 937 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 ESR2Q92731 530 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 YTHDC1Q96MU7 727 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 JMJD8Q96S16 334 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 SEZ6LQ9BYH1 1024 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 TTYH1Q9H313 450 aaPredicted RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 ADD3Q9UEY8 706 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 MBD1Q9UIS9 605 aaPredicted RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 CNOT6Q9ULM6 557 aaKnown RBP8.48□□□□□ -1.05
USP54-208ENST00000461520 Q9Y3F1 56 aa8.48□□□□□ -1.05
USP54-208ENST00000461520 PRUNE2Q8WUY3 3088 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.47□□□□□ -1.05
USP54-208ENST00000461520 ZEB2O60315 1214 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 CABYRO75952 493 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 TIMP1P01033 207 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 FOSL2P15408 326 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 ZNF543Q08ER8 600 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 CCDC178Q5BJE1 867 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 GPATCH4Q5T3I0 446 aaKnown RBP8.47□□□□□ -1.05
USP54-208ENST00000461520 MFSD5Q6N075 450 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 TAPT1Q6NXT6 567 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 NOL8Q76FK4 1167 aaKnown RBP8.47□□□□□ -1.05
USP54-208ENST00000461520 TLK2Q86UE8 772 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 NT5DC4Q86YG4 428 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 TBC1D10CQ8IV04 446 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 FIBCD1Q8N539 461 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 NUP43Q8NFH3 380 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 EXOC6Q8TAG9 804 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 MRRFQ96E11 262 aaKnown RBP8.47□□□□□ -1.05
USP54-208ENST00000461520 AP5M1Q9H0R1 490 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 VTA1Q9NP79 307 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 DIAPH3Q9NSV4 1193 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 SIRT5Q9NXA8 310 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 IMPACTQ9P2X3 320 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 TBX21Q9UL17 535 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 ASTN1O14525 1302 aa8.47□□□□□ -1.05
USP54-208ENST00000461520 FRMPD2Q68DX3 1309 aaPredicted RBP8.47□□□□□ -1.05
USP54-208ENST00000461520 SOX9P48436 509 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 ALDH5A1P51649 535 aaPredicted RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 EPHB4P54760 987 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 ERVFRD-1P60508 538 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 YBX1P67809 324 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 CYP4F8P98187 520 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 BEX3Q00994 111 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 PPIGQ13427 754 aaKnown RBP eCLIP8.46□□□□□ -1.06
USP54-208ENST00000461520 BAATQ14032 418 aaPredicted RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 COL9A2Q14055 689 aaPredicted RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 SSPNQ14714 243 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 FSCN1Q16658 493 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 CWC27Q6UX04 472 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 IQCA1Q86XH1 822 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 FBXO16Q8IX29 292 aaPredicted RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 FAM126BQ8IXS8 530 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 NAT16Q8N8M0 369 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 SLC43A3Q8NBI5 491 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 GPRASP2Q96D09 838 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 RNPC3Q96LT9 517 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 MPHOSPH6Q99547 160 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 MAF1Q9H063 256 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 NOL6Q9H6R4 1146 aaKnown RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 CNTD2Q9H8S5 307 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 PDGFCQ9NRA1 345 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 ACSL6Q9UKU0 697 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.46□□□□□ -1.06
USP54-208ENST00000461520 KCTD3Q9Y597 815 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 FHOD1Q9Y613 1164 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 NEDD4P46934 1319 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 WDR19Q8NEZ3 1342 aa8.46□□□□□ -1.06
USP54-208ENST00000461520 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.45□□□□□ -1.06
USP54-208ENST00000461520 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.45□□□□□ -1.06
USP54-208ENST00000461520 PTPDC1A2A3K4 754 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 CD4P01730 458 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 MPOP05164 745 aa8.45□□□□□ -1.06
USP54-208ENST00000461520 ARL4AP40617 200 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms