RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DPF3Q92784 378 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP6V0A1Q93050 837 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TBATAQ96M53 351 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 SAMD11Q96NU1 681 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 EIF3CQ99613 913 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 DESI2Q9BSY9 194 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 B3GNT4Q9C0J1 378 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 PUS7LQ9H0K6 701 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TBC1D22BQ9NU19 505 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ZNF624Q9P2J8 865 aaPredicted RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 WDR35Q9P2L0 1181 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 HCSTQ9UBK5 93 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 AGO2Q9UKV8 859 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 AFG3L2Q9Y4W6 797 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 ANKRD26Q9UPS8 1709 aa5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 TNRC6CQ9HCJ0 1690 aaKnown RBP5.2□□□□□ -1.58
CCDC88A-209ENST00000456975 N4BP2Q86UW6 1770 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 PNPLA7Q6ZV29 1317 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 WDR17Q8IZU2 1322 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SMG6Q86US8 1419 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 C17orf113A0A1B0GUU1 675 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 APAF1O14727 1248 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ASAP2O43150 1006 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HOXC11O43248 304 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 AHCYL1O43865 530 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 BRINP1O60477 761 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TMEM127O75204 238 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HOXC9P31274 260 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HOXC12P31275 282 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 EPS15P42566 896 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ASMTP46597 345 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 OXCT1P55809 520 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ETF1P62495 437 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CACNB2Q08289 660 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 MAP7Q14244 749 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 MAJINQ3KP22 176 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ATG9AQ7Z3C6 839 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SYT9Q86SS6 491 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 AHI1Q8N157 1196 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 RNF10Q8N5U6 811 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 LSMEM1Q8N8F7 131 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SMARCC2Q8TAQ2 1214 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TRPC4APQ8TEL6 797 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CDKL2Q92772 493 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SDCCAG3Q96C92 435 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 KIF1BPQ96EK5 621 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DDX11Q96FC9 970 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SPATA17Q96L03 361 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SNX27Q96L92 541 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ZFP42Q96MM3 310 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HERPUD2Q9BSE4 406 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 UPF3BQ9BZI7 483 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 MTMR12Q9C0I1 747 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SERHL2Q9H4I8 314 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ZSCAN16Q9H4T2 348 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ANLNQ9NQW6 1124 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ANKEF1Q9NU02 776 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 AATFQ9NY61 560 aaKnown RBP eCLIP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DDX20Q9UHI6 824 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HOOK1Q9UJC3 728 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ADAMTS8Q9UP79 889 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 NUDCQ9Y266 331 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HNRNPCL2B2RXH8 293 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ZBTB43O43298 467 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ZEB2O60315 1214 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 PLOD3O60568 738 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HNRNPCL1O60812 293 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 UBOX5O94941 541 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 YEATS4O95619 227 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 PF4V1P10720 104 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CDK4P11802 303 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ATP5JP18859 108 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ANXA13P27216 316 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 MAOBP27338 520 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HOXD12P35452 270 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 HNF1BP35680 557 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 GCLCP48506 637 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 PCBP4P57723 403 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CORO7P57737 925 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DSTNP60981 165 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CTBSQ01459 385 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ZRSR1Q15695 479 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 PRSS53Q2L4Q9 553 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM71Q2Q1W2 868 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 TRIM61Q5EBN2 209 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 BEND6Q5SZJ8 279 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CWF19L1Q69YN2 538 aaKnown RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 FCRLBQ6BAA4 426 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ABHD17CQ6PCB6 329 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CCDC83Q8IWF9 413 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 SYTL1Q8IYJ3 562 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 LSMEM2Q8N112 164 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CBARPQ8N350 705 aaPredicted RBP5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DNAJC5GQ8N7S2 189 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 FAM13CQ8NE31 585 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 IL17RDQ8NFM7 739 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 BTN2A2Q8WVV5 523 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 DTNBP1Q96EV8 351 aa5.19□□□□□ -1.58
CCDC88A-209ENST00000456975 CNDP2Q96KP4 475 aaKnown RBP5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms