RNA–Protein interactions for RNA: ENST00000452182.1

SCN9A-204, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,618 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-204ENST00000452182 SMIM28A0A1B0GU29 152 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 SMTNL1A8MU46 457 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 PTGESO14684 152 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 GRIK3Q13003 919 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 ZBTB6Q15916 424 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 NOMO2Q5JPE7 1267 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 IRF2BP1Q8IU81 584 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 FAM114A1Q8IWE2 563 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 DHX40Q8IX18 779 aaKnown RBP12.56□□□□□ -0.4
SCN9A-204ENST00000452182 URGCPQ8TCY9 931 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 HELQQ8TDG4 1101 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 RPS6KC1Q96S38 1066 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 RAD9AQ99638 391 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 KLK14Q9P0G3 267 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 ARMCX3Q9UH62 379 aaPredicted RBP12.56□□□□□ -0.4
SCN9A-204ENST00000452182 INSL6Q9Y581 213 aa12.56□□□□□ -0.4
SCN9A-204ENST00000452182 RANBP2P49792 3224 aaKnown RBP12.56□□□□□ -0.4
SCN9A-204ENST00000452182 LAMA2P24043 3122 aaKnown RBP12.56□□□□□ -0.4
SCN9A-204ENST00000452182 A0A1W2PPC1 479 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 THP07101 528 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 KRT13P13646 458 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 IBSPP21815 317 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 EEF1GP26641 437 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 TIE1P35590 1138 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 AFF1P51825 1210 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 BFSP1Q12934 665 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 NAB2Q15742 525 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CDKAL1Q5VV42 579 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 TMCO2Q7Z6W1 182 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 WDR49Q8IV35 697 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CMTR2Q8IYT2 770 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 AOPEPQ8N6M6 819 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 KCNV2Q8TDN2 545 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 ZMAT2Q96NC0 199 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 PPP1R10Q96QC0 940 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 FNBP1Q96RU3 617 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CXCL16Q9H2A7 254 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CBX8Q9HC52 389 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 PDE11AQ9HCR9 933 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 SLC38A7Q9NVC3 462 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 TBC1D13Q9NVG8 400 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 FANCLQ9NW38 375 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 TBKBP1A7MCY6 615 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 BECN2A8MW95 431 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 XPOTO43592 962 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 ZNF18P17022 549 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CYP3A5P20815 502 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 SCNN1GP51170 649 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 VAMP7P51809 220 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 AP3M2P53677 418 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 WNT7BP56706 349 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CCDC40Q4G0X9 1142 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 TRIM59Q8IWR1 403 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 LRRC43Q8N309 656 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 PLEKHO2Q8TD55 490 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 SP7Q8TDD2 431 aaPredicted RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CCDC127Q96BQ5 260 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CNOT6LQ96LI5 555 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 YME1L1Q96TA2 773 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CGRRF1Q99675 332 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 ZBED2Q9BTP6 218 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 HSD3B7Q9H2F3 369 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 SAMSN1Q9NSI8 373 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 MIOSQ9NXC5 875 aa12.55□□□□□ -0.4
SCN9A-204ENST00000452182 UBQLN1Q9UMX0 589 aaKnown RBP12.55□□□□□ -0.4
SCN9A-204ENST00000452182 CARNS1A5YM72 827 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 LRRIQ3A6PVS8 624 aaPredicted RBP12.54□□□□□ -0.4
SCN9A-204ENST00000452182 TLL1O43897 1013 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 POMCP01189 267 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 NFICP08651 508 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 GTF2H1P32780 548 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 GATMP50440 423 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 SPAG1Q07617 926 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 DSC1Q08554 894 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 TMEM132DQ14C87 1099 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 JADE1Q6IE81 842 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 FAM117BQ6P1L5 589 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 EFCAB13Q8IY85 973 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 CACTINQ8WUQ7 758 aaKnown RBP12.54□□□□□ -0.4
SCN9A-204ENST00000452182 GBF1Q92538 1859 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 SLC35C1Q96A29 364 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 INTS13Q9NVM9 706 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 PLAGL2Q9UPG8 496 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 INPP5FQ9Y2H2 1132 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 PCDHA11Q9Y5I1 949 aa12.54□□□□□ -0.4
SCN9A-204ENST00000452182 STX10O60499 249 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 DLATP10515 647 aaKnown RBP12.53□□□□□ -0.4
SCN9A-204ENST00000452182 TNNI1P19237 187 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 DLG4P78352 724 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 TUSC3Q13454 348 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 BTG3Q14201 252 aaPredicted RBP12.53□□□□□ -0.4
SCN9A-204ENST00000452182 DUOXA2Q1HG44 320 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 TCP11X2Q5H9J9 407 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 GLRA4Q5JXX5 417 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 C1orf220Q5T0J3 134 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 PRPF38BQ5VTL8 546 aaKnown RBP12.53□□□□□ -0.4
SCN9A-204ENST00000452182 LUZP1Q86V48 1076 aa12.53□□□□□ -0.4
SCN9A-204ENST00000452182 MAGEC2Q9UBF1 373 aaPredicted RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms