RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ATP9BO43861 1147 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ENO3P13929 434 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 HNRNPH1P31943 449 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RECQLP46063 649 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RAP1GDS1P52306 607 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 MDH1BQ5I0G3 518 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 DAB2IPQ5VWQ8 1189 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RIBC1Q8N443 379 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 PAWRQ96IZ0 340 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RAVER2Q9HCJ3 691 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 TUFT1Q9NNX1 390 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 FAM217BQ9NTX9 383 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 WDR35Q9P2L0 1181 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 BLOC1S6Q9UL45 172 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 USP42Q9H9J4 1324 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 CYP27B1O15528 508 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SPAG6O75602 509 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 APRTP07741 180 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 FMO5P49326 533 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SMAD1Q15797 465 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SCN4BQ8IWT1 228 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 KIF2BQ8N4N8 673 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ANKS1AQ92625 1134 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 C18orf8Q96DM3 657 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ATXN7L3BQ96GX2 97 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 MRPL1Q9BYD6 325 aaKnown RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ADAM33Q9BZ11 813 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 PALMDQ9NP74 551 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RNF146Q9NTX7 359 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SUGT1Q9Y2Z0 365 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 KIF1BO60333 1816 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ADCY3O60266 1144 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 MYO1DO94832 1006 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ZNF200P98182 395 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 TSPY1Q01534 308 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 CYLC2Q14093 348 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 MXD4Q14582 209 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 KYNUQ16719 465 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 CMTM5Q96DZ9 223 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 LBHD1Q9BQE6 289 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ADNPQ9H2P0 1102 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SMARCAL1Q9NZC9 954 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 AIPL1Q9NZN9 384 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 MARCOQ9UEW3 520 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 ZNF335Q9H4Z2 1342 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 UBA6A0AVT1 1052 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 FAM205CA6NFA0 338 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 A8MXQ7 604 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 SMAPO00193 183 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 AP3B1O00203 1094 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 IGF2BP3O00425 579 aaKnown RBP eCLIP8.19□□□□□ -1.19e-6■■■□□ 18
NEDD9-204ENST00000448183 KCNN4O15554 427 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 TMEM253P0C7T8 217 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 CDH2P19022 906 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 KCNQ4P56696 695 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 KRT33BQ14525 404 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 UGP2Q16851 508 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 PRUNE1Q86TP1 453 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 CDR2LQ86X02 465 aaPredicted RBP8.19□□□□□ -1.1
NEDD9-204ENST00000448183 PGBD4Q96DM1 585 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 TRIM54Q9BYV2 358 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 UNC45AQ9H3U1 944 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 RAB6BQ9NRW1 208 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 PCDHGB4Q9UN71 923 aa8.19□□□□□ -1.1
NEDD9-204ENST00000448183 UNC13BO14795 1591 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 AKAP10O43572 662 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SERPINB3P29508 390 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PMS1P54277 932 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SCARF1Q14162 830 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SNRNP48Q6IEG0 339 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 C16orf89Q6UX73 402 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PODNQ7Z5L7 613 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PATL1Q86TB9 770 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 DDX42Q86XP3 938 aaKnown RBP eCLIP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SENP7Q9BQF6 1050 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ISCA1Q9BUE6 129 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TIPINQ9BVW5 301 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TRIM45Q9H8W5 580 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SP110Q9HB58 689 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 HOXC10Q9NYD6 342 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 FHOD1Q9Y613 1164 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 NEMP1O14524 444 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 GFAPP14136 432 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 MAGEA4P43358 317 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 NME3Q13232 169 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 NKX1-1Q15270 411 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 CCDC85BQ15834 202 aaPredicted RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 CIAPIN1Q6FI81 312 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TWF2Q6IBS0 349 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 USP49Q70CQ1 688 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 C3orf20Q8ND61 904 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 SLC30A5Q8TAD4 765 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 ARHGEF26Q96DR7 871 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 TMA16Q96EY4 203 aaKnown RBP8.18□□□□□ -1.1
NEDD9-204ENST00000448183 GCNAQ96QF7 691 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 OSBPL8Q9BZF1 889 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 NOD2Q9HC29 1040 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 CASS4Q9NQ75 786 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 DLGAP2Q9P1A6 1054 aa8.18□□□□□ -1.1
NEDD9-204ENST00000448183 PCDHA10Q9Y5I2 948 aa8.18□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms