RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 PON1P27169 355 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 TAF6P49848 677 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SLC12A3P55017 1021 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 TRIM65Q6PJ69 517 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 RAB3IL1Q8TBN0 382 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 DHX35Q9H5Z1 703 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 XPNPEP3Q9NQH7 507 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PODXLO00592 558 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 MOCS2O96007 188 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 STAG3L1P0CL83 205 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 ATN1P54259 1190 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 MFSD10Q14728 455 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 EFHC2Q5JST6 749 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 RAD9BQ6WBX8 426 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 GPR142Q7Z601 462 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CCDC60Q8IWA6 550 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SLC35G2Q8TBE7 412 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 DNAJB3Q8WWF6 145 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 FMO2Q99518 471 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SENP7Q9BQF6 1050 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 WDR35Q9P2L0 1181 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 ARFGEF2Q9Y6D5 1785 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PCSK1P29120 753 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 GTF2H1P32780 548 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PNPLA4P41247 253 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SARSP49591 514 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PMS1P54277 932 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 APBA1Q02410 837 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 NAB2Q15742 525 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 FSCN1Q16658 493 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 BBS9Q3SYG4 887 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 EPC2Q52LR7 807 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 E4F1Q66K89 784 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 AFAP1L2Q8N4X5 818 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 ZNF507Q8TCN5 953 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 COPS5Q92905 334 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 POP1Q99575 1024 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PLCD4Q9BRC7 762 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 FUCA2Q9BTY2 467 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 TRIM62Q9BVG3 475 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 IRX2Q9BZI1 471 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 TRIM17Q9Y577 477 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CICQ96RK0 1608 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SLC15A5A6NIM6 579 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 FZD9O00144 591 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SLC4A1P02730 911 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 RPLP2P05387 115 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 GARSP41250 739 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PTGER2P43116 358 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CDK17Q00537 523 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CUL2Q13617 745 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 E2F4Q16254 413 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CELF3Q5SZQ8 465 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CD302Q8IX05 232 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 SIK2Q9H0K1 926 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 DDX56Q9NY93 547 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 UVRAGQ9P2Y5 699 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PRG3Q9Y2Y8 225 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 CCDC151A5D8V7 595 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 BNIP3LO60238 219 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PPP1R11O60927 126 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 ATP1A1P05023 1023 aaKnown RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 GNL1P36915 607 aaPredicted RBP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 PDE1BQ01064 536 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 NOGQ13253 232 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 BFSP2Q13515 415 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 GPAT2Q6NUI2 795 aa7.86□□□□□ -1.15
SYNE1-213ENST00000448038 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.86□□□□□ -1.15
SYNE1-213ENST00000448038 LGALS2P05162 132 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PNMA6AP0CW24 399 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 RALAP11233 206 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 ATP1A2P50993 1020 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CDH6P55285 790 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SLMAPQ14BN4 828 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 MAP7D1Q3KQU3 841 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PRAMEF19Q5SWL8 479 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 NT5DC1Q5TFE4 455 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PDIK1LQ8N165 341 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 TMC2Q8TDI7 906 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SPIRE2Q8WWL2 714 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SYN2Q92777 582 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 FAF2Q96CS3 445 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 DNAJC18Q9H819 358 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PIDD1Q9HB75 910 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SNX24Q9Y343 169 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 HGSO14964 777 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PDGFRAP16234 1089 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 ITGB5P18084 799 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 PSEN2P49810 448 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CYP24A1Q07973 514 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CACNB2Q08289 660 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 SF3A3Q12874 501 aaKnown RBP eCLIP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 MYBPC2Q14324 1141 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CCDC6Q16204 474 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 WDR24Q96S15 920 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 CGRRF1Q99675 332 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 MED4Q9NPJ6 270 aa7.85□□□□□ -1.15
SYNE1-213ENST00000448038 DNAJC17Q9NVM6 304 aaKnown RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 KLHL8Q9P2G9 620 aaPredicted RBP7.85□□□□□ -1.15
SYNE1-213ENST00000448038 APOEP02649 317 aa7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms