RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 SYNGAP1Q96PV0 1343 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 GSC2O15499 205 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 GH1P01241 217 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 SPATA31D3P0C874 917 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 SMARCA1P28370 1054 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 OXCT1P55809 520 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 NR1H3Q13133 447 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 TTLL12Q14166 644 aaPredicted RBP20.41■□□□□ 0.86
HMGA1-205ENST00000447654 LONRF1Q17RB8 773 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 DOK7Q18PE1 504 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 SPATA31D4Q6ZUB0 917 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 RIBC1Q8N443 379 aaPredicted RBP20.41■□□□□ 0.86
HMGA1-205ENST00000447654 MPP4Q96JB8 637 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 AGBL1Q96MI9 1066 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 MIPEPQ99797 713 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 ECSITQ9BQ95 431 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 OXCT2Q9BYC2 517 aaPredicted RBP20.41■□□□□ 0.86
HMGA1-205ENST00000447654 LRRC27Q9C0I9 530 aa20.41■□□□□ 0.86
HMGA1-205ENST00000447654 HGSO14964 777 aaPredicted RBP20.4■□□□□ 0.86
HMGA1-205ENST00000447654 EDF1O60869 148 aaKnown RBP20.4■□□□□ 0.86
HMGA1-205ENST00000447654 ASMTLO95671 621 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 CFAP157Q5JU67 520 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 RFWD3Q6PCD5 774 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 B3GNT6Q6ZMB0 384 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 PASD1Q8IV76 773 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 KBTBD2Q8IY47 623 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 UBA5Q9GZZ9 404 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 STK17AQ9UEE5 414 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 PCDHA4Q9UN74 947 aa20.4■□□□□ 0.86
HMGA1-205ENST00000447654 FAM47DPA6NHR8 397 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 M0R2N6 131 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 LGR5O75473 907 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 CBX6O95503 412 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 SLURP2P0DP57 97 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 CREB1P16220 341 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 CTNNA2P26232 953 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 ACADVLP49748 655 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 PLOD1Q02809 727 aaPredicted RBP20.39■□□□□ 0.86
HMGA1-205ENST00000447654 SV2BQ7L1I2 683 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 OTUD6AQ7L8S5 288 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 CCDC125Q86Z20 511 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 MAP7D3Q8IWC1 876 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 TRIM59Q8IWR1 403 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 CEP95Q96GE4 821 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 DDX4Q9NQI0 724 aaKnown RBP20.39■□□□□ 0.86
HMGA1-205ENST00000447654 KCNQ5Q9NR82 932 aa20.39■□□□□ 0.86
HMGA1-205ENST00000447654 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP20.39■□□□□ 0.85
HMGA1-205ENST00000447654 TROVE2P10155 538 aaKnown RBP eCLIP20.39■□□□□ 0.85
HMGA1-205ENST00000447654 CTC1Q2NKJ3 1217 aa20.39■□□□□ 0.85
HMGA1-205ENST00000447654 P3H1Q32P28 736 aa20.39■□□□□ 0.85
HMGA1-205ENST00000447654 TAF1BQ53T94 588 aaPredicted RBP20.39■□□□□ 0.85
HMGA1-205ENST00000447654 CDC42EP4Q9H3Q1 356 aaKnown RBP20.39■□□□□ 0.85
HMGA1-205ENST00000447654 TRPV5Q9NQA5 729 aa20.39■□□□□ 0.85
HMGA1-205ENST00000447654 UTRNP46939 3433 aa20.39■□□□□ 0.85
HMGA1-205ENST00000447654 ADAMTSL1Q8N6G6 1762 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CDH16O75309 829 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 ARID5AQ03989 594 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 PPATQ06203 517 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 PICALMQ13492 652 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 DCTN2Q13561 401 aaKnown RBP20.38■□□□□ 0.85
HMGA1-205ENST00000447654 SPIDRQ14159 915 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 LARP7Q4G0J3 582 aaKnown RBP eCLIP20.38■□□□□ 0.85
HMGA1-205ENST00000447654 USP17L2Q6R6M4 530 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 UHMK1Q8TAS1 419 aaKnown RBP20.38■□□□□ 0.85
HMGA1-205ENST00000447654 DDX50Q9BQ39 737 aaKnown RBP20.38■□□□□ 0.85
HMGA1-205ENST00000447654 ERVK-5Q9HDB9 667 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 BTBD7Q9P203 1132 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 COL11A2P13942 1736 aaPredicted RBP20.38■□□□□ 0.85
HMGA1-205ENST00000447654 AP1G1O43747 822 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 MMP10P09238 476 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CYP11B2P19099 503 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 RAP1GDS1P52306 607 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 RAB15P59190 212 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 XIAPP98170 497 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 DCAF12L1Q5VU92 463 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CLNKQ7Z7G1 428 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CLEC10AQ8IUN9 316 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 DAGLBQ8NCG7 672 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 NEDD1Q8NHV4 660 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 RFFLQ8WZ73 363 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CALML4Q96GE6 196 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 CYLDQ9NQC7 956 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 WHRNQ9P202 907 aa20.38■□□□□ 0.85
HMGA1-205ENST00000447654 NRXN2Q9P2S2 1712 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 CCDC194A0A1B0GVG4 234 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 APBA3O96018 575 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 SCNN1DP51172 638 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 SPARCL1Q14515 664 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 PDK4Q16654 411 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 CYP1B1Q16678 543 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 FAM47EQ6ZV65 393 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 ARMCX6Q7L4S7 300 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 ADGRG6Q86SQ4 1221 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 MCUR1Q96AQ8 359 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 FNBP1Q96RU3 617 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 PLIN2Q99541 437 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 TMEM98Q9Y2Y6 226 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 C10orf71Q711Q0 1435 aa20.37■□□□□ 0.85
HMGA1-205ENST00000447654 FAM196BA6NMK8 535 aa20.36■□□□□ 0.85
HMGA1-205ENST00000447654 MIF4GDA9UHW6 222 aaKnown RBP20.36■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms