RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 DENND2CQ68D51 928 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 CYFIP1Q7L576 1253 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 HOOK3Q86VS8 718 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 PGM2Q96G03 612 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 TEX13BQ9BXU2 312 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 TRIM7Q9C029 511 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 PICK1Q9NRD5 415 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 PCDHB2Q9Y5E7 798 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 PHIPQ8WWQ0 1821 aa17.13■□□□□ 0.33
SHQ1-202ENST00000444040 CLDN3O15551 220 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 SUPT20HL2P0C7V6 817 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 ABCD1P33897 745 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 LIG4P49917 911 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 BYSLQ13895 437 aaKnown RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 SUPT20HL1Q3ZLR7 823 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 TDRD10Q5VZ19 366 aaKnown RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 PACS2Q86VP3 889 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 ZNF677Q86XU0 584 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 SLCO2A1Q92959 643 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 HAPLN2Q9GZV7 340 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 ACAD9Q9H845 621 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 MTRF1LQ9UGC7 380 aaKnown RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 GGA2Q9UJY4 613 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 PTPN22Q9Y2R2 807 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 MEFVO15553 781 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 CYP1A1P04798 512 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 MAPK4P31152 587 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 NLRP11P59045 1033 aaKnown RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 EMC2Q15006 297 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 PRAMEF18Q5VWM3 479 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 MIS18BP1Q6P0N0 1132 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 CRELD2Q6UXH1 353 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 CATSPERGQ6ZRH7 1159 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 C3orf20Q8ND61 904 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 ZNF526Q8TF50 670 aaPredicted RBP17.12■□□□□ 0.33
SHQ1-202ENST00000444040 CYFIP2Q96F07 1278 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 DOCK5Q9H7D0 1870 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 PTPRJQ12913 1337 aa17.12■□□□□ 0.33
SHQ1-202ENST00000444040 C19orf81C9J6K1 198 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 TP73O15350 636 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 HLA-DRAP01903 254 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 RRM1P23921 792 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 GNPTABQ3T906 1256 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 YTHDF3Q7Z739 585 aaKnown RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 CPA5Q8WXQ8 436 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 RAPGEF5Q92565 580 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 RGS17Q9UGC6 210 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 PASKQ96RG2 1323 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 VNN1O95497 513 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 ACO1P21399 889 aaKnown RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 LIG3P49916 1009 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 DEFB132Q7Z7B7 95 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 MAFBQ9Y5Q3 323 aaPredicted RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 ATG7O95352 703 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 ECEL1O95672 775 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 RARGP13631 454 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 ACOT2P49753 483 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 CENPCQ03188 943 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 LLGL1Q15334 1064 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 C6orf89Q6UWU4 347 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 ASAP3Q8TDY4 903 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 TMEM143Q96AN5 459 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 FNBP1Q96RU3 617 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 TMEM109Q9BVC6 243 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 CNOT10Q9H9A5 744 aaKnown RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 KCNG1Q9UIX4 513 aa17.11■□□□□ 0.33
SHQ1-202ENST00000444040 AGO2Q9UKV8 859 aaKnown RBP17.11■□□□□ 0.33
SHQ1-202ENST00000444040 PIGRP01833 764 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 MYBL1P10243 752 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 TNNI1P19237 187 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 POLGP54098 1239 aaPredicted RBP17.1■□□□□ 0.33
SHQ1-202ENST00000444040 SLMAPQ14BN4 828 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 ZNF568Q3ZCX4 644 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 WDR44Q5JSH3 913 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 SPOPLQ6IQ16 392 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 LLGL2Q6P1M3 1020 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 MICALCLQ6ZW33 695 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 MICALL1Q8N3F8 863 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 C1orf54Q8WWF1 131 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 HERPUD2Q9BSE4 406 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 PLVAPQ9BX97 442 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 FAM129AQ9BZQ8 928 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 PORCNQ9H237 461 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 DHX33Q9H6R0 707 aaKnown RBP17.1■□□□□ 0.33
SHQ1-202ENST00000444040 RIPK2O43353 540 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 GLRA2P23416 452 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 SLC1A1P43005 524 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 BPIFB4P59827 614 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 POTEAQ6S8J7 498 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 MON1BQ7L1V2 547 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 MDM1Q8TC05 714 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 ZBTB45Q96K62 511 aaPredicted RBP17.1■□□□□ 0.33
SHQ1-202ENST00000444040 CEP89Q96ST8 783 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 APOBEC3GQ9HC16 384 aaKnown RBP17.1■□□□□ 0.33
SHQ1-202ENST00000444040 GJA3Q9Y6H8 435 aa17.1■□□□□ 0.33
SHQ1-202ENST00000444040 ZNF541Q9H0D2 1346 aa17.09■□□□□ 0.33
SHQ1-202ENST00000444040 C5orf60A6NFR6 353 aa17.09■□□□□ 0.33
SHQ1-202ENST00000444040 FGFR4P22455 802 aa17.09■□□□□ 0.33
SHQ1-202ENST00000444040 STRN3Q13033 797 aa17.09■□□□□ 0.33
SHQ1-202ENST00000444040 QPCTQ16769 361 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms