RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KRTAP3-3Q9BYR6 98 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 KRTAP3-2Q9BYR7 98 aa13.52□□□□□ -0.25
USP40-205ENST00000430158 LDHAP00338 332 aaKnown RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 NR3C1P04150 777 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 RB1P06400 928 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 THP07101 528 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 LAG3P18627 525 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 PBX3P40426 434 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 MATR3P43243 847 aaKnown RBP eCLIP13.51□□□□□ -0.256e-8■■■■■ 28.8
USP40-205ENST00000430158 YARSP54577 528 aaKnown RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 BCAR1P56945 870 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 CAMK1Q14012 370 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 EDRF1Q3B7T1 1238 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 GLRA4Q5JXX5 417 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 ANKRD40Q6AI12 368 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 FOXR2Q6PJQ5 311 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 KCNT2Q6UVM3 1135 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 Q7L0L9 218 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 HS2ST1Q7LGA3 356 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 SLC39A11Q8N1S5 342 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 XXYLT1Q8NBI6 393 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 CXorf38Q8TB03 319 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 GOLGA5Q8TBA6 731 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 URGCPQ8TCY9 931 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 P2RX5Q93086 422 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 DHTKD1Q96HY7 919 aaPredicted RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 MFSD14AQ96MC6 490 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 SAMD11Q96NU1 681 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 DUSP9Q99956 384 aaKnown RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 PAAF1Q9BRP4 392 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 TMEM175Q9BSA9 504 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 PLVAPQ9BX97 442 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 VN1R3Q9BXE9 311 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 RPF1Q9H9Y2 349 aaKnown RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 CERS4Q9HA82 394 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 TOPORSQ9NS56 1045 aaPredicted RBP13.51□□□□□ -0.25
USP40-205ENST00000430158 MARCH5Q9NX47 278 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 CACNG4Q9UBN1 327 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 VWA8A3KMH1 1905 aa13.51□□□□□ -0.25
USP40-205ENST00000430158 COL4A4P53420 1690 aaPredicted RBP13.5□□□□□ -0.25
USP40-205ENST00000430158 F8W810 466 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 H3BNC9 293 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 RFXAPO00287 272 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 KIF20AO95235 890 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 ITGB1P05556 798 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 CCNE1P24864 410 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 DNAJB1P25685 340 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 CASP4P49662 377 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 CYP2J2P51589 502 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 EMP3P54852 163 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 TUSC3Q13454 348 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 KLHL40Q2TBA0 621 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 CCDC183Q5T5S1 534 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 SCARA3Q6AZY7 606 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 TTI2Q6NXR4 508 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 CD302Q8IX05 232 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 EFCAB13Q8IY85 973 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 KLHL23Q8NBE8 558 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 SPPL3Q8TCT6 385 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 C18orf25Q96B23 403 aaPredicted RBP13.5□□□□□ -0.25
USP40-205ENST00000430158 BORCS6Q96GS4 357 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 GUCD1Q96NT3 240 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 TSPAN18Q96SJ8 248 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 ASB7Q9H672 318 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 KIAA1586Q9HCI6 787 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 RWDD3Q9Y3V2 267 aa13.5□□□□□ -0.25
USP40-205ENST00000430158 PTPRJQ12913 1337 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 TRIM49BA6NDI0 452 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 NRP1O14786 923 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 GRM6O15303 877 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 NFICP08651 508 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 POU3F3P20264 500 aaPredicted RBP13.49□□□□□ -0.25
USP40-205ENST00000430158 CTNNB1P35222 781 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 CLDN10P78369 228 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 PLCB3Q01970 1234 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 RNASELQ05823 741 aaKnown RBP13.49□□□□□ -0.25
USP40-205ENST00000430158 SPAG1Q07617 926 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 CYP24A1Q07973 514 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 ADGRE1Q14246 886 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 SNRNP35Q16560 246 aaKnown RBP13.49□□□□□ -0.25
USP40-205ENST00000430158 C1orf220Q5T0J3 134 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 ZNF697Q5TEC3 545 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 JADE1Q6IE81 842 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 RNF168Q8IYW5 571 aaPredicted RBP13.49□□□□□ -0.25
USP40-205ENST00000430158 ARNTL2Q8WYA1 636 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 IGSF21Q96ID5 467 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 FAM84AQ96KN4 292 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 ZNF558Q96NG5 402 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 RPS6KC1Q96S38 1066 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 PRDM12Q9H4Q4 367 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 GOLGA2P5Q9HBQ8 144 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 PDE11AQ9HCR9 933 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 MTMR10Q9NXD2 777 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 MTUS1Q9ULD2 1270 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 DERAQ9Y315 318 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 C2CD2Q9Y426 696 aa13.49□□□□□ -0.25
USP40-205ENST00000430158 REV3LO60673 3130 aa13.48□□□□□ -0.25
USP40-205ENST00000430158 ZNF233A6NK53 670 aa13.48□□□□□ -0.25
USP40-205ENST00000430158 NT5C1B-RDH14C9J2C7 533 aa13.48□□□□□ -0.25
USP40-205ENST00000430158 MAPK13O15264 365 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms