RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 ZXDCQ2QGD7 858 aaPredicted RBP7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 MIIPQ5JXC2 388 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 THEMIS2Q5TEJ8 643 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 METRNLQ641Q3 311 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 ZNF529Q6P280 563 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 CATIPQ7Z7H3 387 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 DCBLD1Q8N8Z6 715 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 CACTINQ8WUQ7 758 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 HPS3Q969F9 1004 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 SLC12A5Q9H2X9 1139 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 POLHQ9Y253 713 aa7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 RUVBL1Q9Y265 456 aaKnown RBP7.35□□□□□ -1.23
CCDC88A-206ENST00000430086 LEFTY2O00292 366 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 RECQL4O94761 1208 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 PEX11BO96011 259 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 ALAS1P13196 640 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 APOBEC3AP31941 199 aaPredicted RBP7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 NHLH2Q02577 135 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 CREMQ03060 361 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 PPP2R5AQ15172 486 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 PGS1Q32NB8 556 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 GADL1Q6ZQY3 521 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 CHPFQ8IZ52 775 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 MVB12AQ96EY5 273 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 MAN1C1Q9NR34 630 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 TCEAL9Q9UHQ7 104 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 EIF2B4Q9UI10 523 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 G3BP2Q9UN86 482 aaKnown RBP7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 SORCS3Q9UPU3 1222 aa7.34□□□□□ -1.23
CCDC88A-206ENST00000430086 MATN3O15232 486 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 OFD1O75665 1012 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 ARIH2O95376 493 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 C1SP09871 688 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 U2AF1L5P0DN76 240 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 ZNF280AP59817 542 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 U2AF1Q01081 240 aaKnown RBP eCLIP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 PABPC1LQ4VXU2 614 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 IFIT1BQ5T764 474 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 FAM102AQ5T9C2 384 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 CXorf57Q6NSI4 855 aaKnown RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 DBX2Q6ZNG2 339 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 TPH2Q8IWU9 490 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 C3orf20Q8ND61 904 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 IL17RDQ8NFM7 739 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 NLGN4YQ8NFZ3 816 aaPredicted RBP7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 PLEKHG4BQ96PX9 1271 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 MAP3K14Q99558 947 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 FBXO34Q9NWN3 711 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 CHST2Q9Y4C5 530 aa7.33□□□□□ -1.24
CCDC88A-206ENST00000430086 AHRRA9YTQ3 701 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 SCGB1D2O95969 90 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 MTHFD1P11586 935 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 HSPA6P17066 643 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 TNFRSF1AP19438 455 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 MALP21145 153 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 LPOP22079 712 aaPredicted RBP7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 CHN2P52757 468 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC25A3Q00325 362 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 LRRC41Q15345 812 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 KHDC1Q4VXA5 237 aaKnown RBP7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 FAM102BQ5T8I3 360 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 AGAP9Q5VTM2 703 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 NXNQ6DKJ4 435 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 CPT1CQ8TCG5 803 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 RGMAQ96B86 450 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 KRTAP9-3Q9BYQ3 159 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 NMRK2Q9NPI5 230 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 KLHL42Q9P2K6 505 aa7.32□□□□□ -1.24
CCDC88A-206ENST00000430086 TCRBV7S2A1N4TA0A589 114 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 GRM6O15303 877 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 SCAF4O95104 1147 aaKnown RBP7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 HK3P52790 923 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 PTTG1IPP53801 180 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 SNAPC2Q13487 334 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 B3GNT9Q6UX72 402 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 MED25Q71SY5 747 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 EPM2AIP1Q7L775 607 aaPredicted RBP7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 UBE3BQ7Z3V4 1068 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 GDF7Q7Z4P5 450 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 RHOT2Q8IXI1 618 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 TCEAL8Q8IYN2 117 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 C1GALT1C1Q96EU7 318 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 NEU1Q99519 415 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 VRK1Q99986 396 aaPredicted RBP7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 ZNF747Q9BV97 191 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC46A2Q9BY10 475 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 KMT5AQ9NQR1 393 aa7.31□□□□□ -1.24
CCDC88A-206ENST00000430086 KIAA0391O15091 583 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 TSPAN6O43657 245 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 AP1G1O43747 822 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 FAM20BO75063 409 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 FTH1P19P0C7X4 201 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 GCSHP23434 173 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 RNASE9P60153 205 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 NOGQ13253 232 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 PUM1Q14671 1186 aaKnown RBP eCLIP7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 ZFPM1Q8IX07 1006 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 SLC35G2Q8TBE7 412 aa7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 DIS3LQ8TF46 1054 aaKnown RBP7.3□□□□□ -1.24
CCDC88A-206ENST00000430086 GSTO2Q9H4Y5 243 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms