RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 C11orf74Q86VG3 221 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 CLEC10AQ8IUN9 316 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 LATS2Q9NRM7 1088 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 PKP3Q9Y446 797 aa16.21■□□□□ 0.19
PTPRF-206ENST00000429895 ADGRL3Q9HAR2 1447 aa16.21■□□□□ 0.18
PTPRF-206ENST00000429895 C2CD2LO14523 706 aa16.21■□□□□ 0.18
PTPRF-206ENST00000429895 HS6ST3Q8IZP7 471 aa16.21■□□□□ 0.18
PTPRF-206ENST00000429895 CAPN10Q9HC96 672 aa16.21■□□□□ 0.18
PTPRF-206ENST00000429895 ADGBQ8N7X0 1667 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 EEF2KO00418 725 aaKnown RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ANGPT2O15123 496 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 GUCY1A2P33402 732 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 NT5C2P49902 561 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 TWF1Q12792 350 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 MKRN4PQ13434 485 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 CEP55Q53EZ4 464 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 MCEEQ96PE7 176 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 FAM49BQ9NUQ9 324 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ZBTB12Q9Y330 459 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 NDUFS3O75489 264 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ADRA2BP18089 450 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 RBP5P82980 135 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 PDXDC1Q6P996 788 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ICA1LQ8NDH6 482 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 COG1Q8WTW3 980 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 BHMTQ93088 406 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 EPC1Q9H2F5 836 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 MTIF3Q9H2K0 278 aaKnown RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 YY1AP1Q9H869 796 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ARHGEF38Q9NXL2 777 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ADGRA2Q96PE1 1338 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 CDC42BPGQ6DT37 1551 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 MYO1GB0I1T2 1018 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 RTN2O75298 545 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ATP5HO75947 161 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 APRTP07741 180 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ITGA4P13612 1032 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 PDGFRAP16234 1089 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 CENPAP49450 140 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ADNPQ9H2P0 1102 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 GGT7Q9UJ14 662 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 CEP170Q5SW79 1584 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 SUPT3HO75486 399 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 R3HDM1Q15032 1099 aaKnown RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 DHX40Q8IX18 779 aaKnown RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 RFFLQ8WZ73 363 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 FAM167BQ9BTA0 163 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 KATNAL1Q9BW62 490 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 TAF1DQ9H5J8 278 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ZFYVE28Q9HCC9 887 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 TUFT1Q9NNX1 390 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 C6orf203Q9P0P8 240 aaPredicted RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 AXIN2Q9Y2T1 843 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 GRID2IPA4D2P6 1211 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 SUPT3HB4E1H0 165 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 GH1P01241 217 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 ATP1A1P05023 1023 aaKnown RBP16.2■□□□□ 0.18
PTPRF-206ENST00000429895 SCFD1Q8WVM8 642 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 TSC22D3Q99576 134 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 SYTL2Q9HCH5 934 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 CD274Q9NZQ7 290 aa16.2■□□□□ 0.18
PTPRF-206ENST00000429895 MAN1A2O60476 641 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 DDHD2O94830 711 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 ENO1P06733 434 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 SRBD1Q8N5C6 995 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 AMACRQ9UHK6 382 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 GMNCA6NCL1 334 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 HSPA1AP0DMV8 641 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 HSPA1BP0DMV9 641 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 IL10P22301 178 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 ATXN3P54252 364 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 SNAPC2Q13487 334 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 SCARF1Q14162 830 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 C6orf10Q5SRN2 563 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 FMR1NBQ8N0W7 255 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 STX19Q8N4C7 294 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 SLC30A1Q9Y6M5 507 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 CDHR2Q9BYE9 1310 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 P3H1Q32P28 736 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 PLA2G4FQ68DD2 849 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 FAM118BQ9BPY3 351 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 HACL1Q9UJ83 578 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 PLEKHG2Q9H7P9 1386 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 PRR23AA6NEV1 266 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 RSPH10B2B2RC85 870 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 RSPH10BP0C881 870 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 NBPF20Q3BBV1 942 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 ANGEL2Q5VTE6 544 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 IER5Q5VY09 327 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 NBPF10Q6P3W6 841 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 FRMD5Q7Z6J6 570 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 TRMT2AQ8IZ69 625 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 PTPRN2Q92932 1015 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 TMA16Q96EY4 203 aaKnown RBP16.19■□□□□ 0.18
PTPRF-206ENST00000429895 SMARCAD1Q9H4L7 1026 aa16.19■□□□□ 0.18
PTPRF-206ENST00000429895 DDX5P17844 614 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 CSE1LP55060 971 aaKnown RBP16.18■□□□□ 0.18
PTPRF-206ENST00000429895 KDSRQ06136 332 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 SGO1Q5FBB7 561 aa16.18■□□□□ 0.18
PTPRF-206ENST00000429895 SLC7A14Q8TBB6 771 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms