RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NOP14P78316 857 aaKnown RBP8.99□□□□□ -0.97
USP54-203ENST00000418501 ITIH3Q06033 890 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 CBWD6Q4V339 395 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 CBWD3Q5JTY5 395 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 CBWD5Q5RIA9 395 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 RAET1EQ8TD07 263 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 ZNF653Q96CK0 615 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 VCPIP1Q96JH7 1222 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 TOMM70O94826 608 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 LSM8O95777 96 aaKnown RBP8.99□□□□□ -0.97
USP54-203ENST00000418501 ADRB2P07550 413 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 C6orf222P0C671 652 aaPredicted RBP8.99□□□□□ -0.97
USP54-203ENST00000418501 MAN1A1P33908 653 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 PPP3CAQ08209 521 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 MAATS1Q7Z4T9 603 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 TRIM50Q86XT4 487 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SHC3Q92529 594 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 RPS6KC1Q96S38 1066 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 PDE11AQ9HCR9 933 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 WDR35Q9P2L0 1181 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SNX12Q9UMY4 172 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SOCS7O14512 581 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 ATP4AP20648 1035 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SP3Q02447 781 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 GNASQ5JWF2 1037 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 SLC27A1Q6PCB7 646 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 IFT20Q8IY31 132 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 FAM71AQ8IYT1 594 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 WDR24Q96S15 920 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 WNT8AQ9H1J5 351 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 HESX1Q9UBX0 185 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 GTF3C4Q9UKN8 822 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 C2CD2Q9Y426 696 aa8.99□□□□□ -0.97
USP54-203ENST00000418501 A0A087WZ62 844 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 MYO1FO00160 1098 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 FOXN3O00409 490 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 BUB1O43683 1085 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 ZNF286BP0CG31 522 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 SMIM10L2AP0DMW4 78 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 SMIM10L2BP0DMW5 78 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 CD19P15391 556 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 GNA15P30679 374 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 IRF2BP2Q7Z5L9 587 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 GLYCTKQ8IVS8 523 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 FDXACB1Q9BRP7 624 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 HOMER3Q9NSC5 361 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 UBQLN1Q9UMX0 589 aaKnown RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 RAB27AP51159 221 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 SOX10P56693 466 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 PTPN11Q06124 597 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 DMTNQ08495 405 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 C8orf74Q6P047 294 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 ZNF571Q7Z3V5 609 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 TAS1R2Q8TE23 839 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 PGBD4Q96DM1 585 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 A0A087X0T9 212 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 GPR182O15218 404 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 PALMO75781 387 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 FTLP02792 175 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 FAM228BP0C875 321 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 STAG3L1P0CL83 205 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 HOXD8P13378 290 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 ABCB4P21439 1286 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 CDR1P51861 262 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 TARSL2A2RTX5 802 aaKnown RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 PGRMC1O00264 195 aaKnown RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 MYCNP04198 464 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 ADSSP30520 456 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 GRM5P41594 1212 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 SSR1P43307 286 aaKnown RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 CRYBB1P53674 252 aaPredicted RBP8.98□□□□□ -0.97
USP54-203ENST00000418501 GALCP54803 685 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 HGSNATQ68CP4 663 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 ACAD10Q6JQN1 1059 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 DCUN1D2Q6PH85 259 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 TMEM270Q6UE05 265 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 ARRDC4Q8NCT1 418 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.98□□□□□ -0.97
USP54-203ENST00000418501 CAPZA3Q96KX2 299 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 UBN1Q9NPG3 1134 aa8.98□□□□□ -0.97
USP54-203ENST00000418501 CCDC66A2RUB6 948 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CYP26A1O43174 497 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CEP104O60308 925 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 F2P00734 622 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 MBTD1Q05BQ5 628 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 PDE4CQ08493 712 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 TAF3Q5VWG9 929 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 RBBP8NLQ8NC74 664 aaPredicted RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 SIX2Q9NPC8 291 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CHST12Q9NRB3 414 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 PARP2Q9UGN5 583 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CPSF3Q9UKF6 684 aaKnown RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 A0A0G2JMZ2 1700 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 NCANO14594 1321 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 MROH7Q68CQ1 1323 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 EPHB6O15197 1021 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 PAEPP09466 180 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 CYP11B1P15538 503 aa8.97□□□□□ -0.97
USP54-203ENST00000418501 MCCD1P59942 119 aaPredicted RBP8.97□□□□□ -0.97
USP54-203ENST00000418501 CLDN10P78369 228 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms