RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 LRRN2O75325 713 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 CD2BP2O95400 341 aaKnown RBP12.7□□□□□ -0.38
USP4-204ENST00000416417 PAPLNO95428 1278 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 SRFP11831 508 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 GRM5P41594 1212 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 NUBP1P53384 320 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 ARPP19P56211 112 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 GPC5P78333 572 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 ANGPT1Q15389 498 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 UPP1Q16831 310 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 DCLRE1AQ6PJP8 1040 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.7□□□□□ -0.38
USP4-204ENST00000416417 DTHD1Q6ZMT9 781 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 C1orf186Q6ZWK4 172 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 CCDC105Q8IYK2 499 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 DDX27Q96GQ7 796 aaKnown RBP12.7□□□□□ -0.38
USP4-204ENST00000416417 PNMA5Q96PV4 448 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 TCHPQ9BT92 498 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 IRF2BPLQ9H1B7 796 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 PTPRHQ9HD43 1115 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.7□□□□□ -0.38
USP4-204ENST00000416417 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP4-204ENST00000416417 DNMT3BQ9UBC3 853 aaKnown RBP12.7□□□□□ -0.38
USP4-204ENST00000416417 MTRRQ9UBK8 725 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 WNT16Q9UBV4 365 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 VWA8A3KMH1 1905 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 PHLPP2Q6ZVD8 1323 aa12.7□□□□□ -0.38
USP4-204ENST00000416417 PRR23AA6NEV1 266 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 ABLIM1O14639 778 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 NBL1P41271 181 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 YARSP54577 528 aaKnown RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 ELAVL2Q12926 359 aaKnown RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 DMP1Q13316 513 aaPredicted RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 RAB33AQ14088 237 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 FGF13Q92913 245 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 KXD1Q9BQD3 176 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 CCDC94Q9BW85 323 aaPredicted RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 MRPL4Q9BYD3 311 aaKnown RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 FOXQ1Q9C009 403 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 ARHGAP28Q9P2N2 729 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 ANKFY1Q9P2R3 1169 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 CDH7Q9ULB5 785 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 VPS13AQ96RL7 3174 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 MTCL1Q9Y4B5 1905 aaKnown RBP12.69□□□□□ -0.38
USP4-204ENST00000416417 DOCK6Q96HP0 2047 aa12.69□□□□□ -0.38
USP4-204ENST00000416417 CFAP54Q96N23 3096 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 VWA3AA6NCI4 1184 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 PROB1E7EW31 1015 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 PODXLO00592 558 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 C1RP00736 705 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 HNRNPA1P09651 372 aaKnown RBP eCLIP12.68□□□□□ -0.38
USP4-204ENST00000416417 SPAG1Q07617 926 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 POTEHQ6S545 545 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 ALKAL1Q6UXT8 129 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 SNX27Q96L92 541 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 RTP3Q9BQQ7 232 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 RAB34Q9BZG1 259 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 TMEM134Q9H6X4 195 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 DOCK8Q8NF50 2099 aa12.68□□□□□ -0.38
USP4-204ENST00000416417 TMEM189-UBE2V1I3L0A0 370 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 NRG2O14511 850 aaPredicted RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 XYLBO75191 536 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 GJB2P29033 226 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 SNW1Q13573 536 aaKnown RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 SLC5A9Q2M3M2 681 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 MPZL3Q6UWV2 235 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 MCRS1Q96EZ8 462 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 TMX3Q96JJ7 454 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 DRC1Q96MC2 740 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 UROC1Q96N76 676 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 ACAP3Q96P50 834 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 HAPLN2Q9GZV7 340 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 ARHGEF3Q9NR81 526 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 TUBGCP4Q9UGJ1 667 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 R4GN57 208 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 DMDP11532 3685 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 WDR27A2RRH5 827 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 SEC24AO95486 1093 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 MCF2P10911 925 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 CD72P21854 359 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 PROZP22891 400 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 PRPHP41219 470 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 ATP2C1P98194 919 aaPredicted RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 ROR1Q01973 937 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 DHX8Q14562 1220 aaKnown RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 PABPC1LQ4VXU2 614 aaKnown RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 XKR4Q5GH76 650 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 VARS2Q5ST30 1063 aaKnown RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 PDXDC1Q6P996 788 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 APBB1IPQ7Z5R6 666 aaPredicted RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 NPAS3Q8IXF0 933 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 LRRC15Q8TF66 581 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 NXPE3Q969Y0 559 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 PLA2G2FQ9BZM2 168 aa12.67□□□□□ -0.38
USP4-204ENST00000416417 TOPORSQ9NS56 1045 aaPredicted RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 MTF2Q9Y483 593 aaPredicted RBP12.67□□□□□ -0.38
USP4-204ENST00000416417 CACNA1HO95180 2353 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 LAD1O00515 517 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 RHOP08100 348 aa12.66□□□□□ -0.38
USP4-204ENST00000416417 PLA2G4BP0C869 781 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms