RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 L1RE1Q9UN81 338 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ST20-MTHFSA0A0A6YYL1 179 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 BICDL2A1A5D9 508 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 HMX2A2RU54 273 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 GNAT3A8MTJ3 354 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 B3GALT2O43825 422 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ZNF865P0CJ78 1059 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 HARSP12081 509 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 NID1P14543 1247 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 AGXTP21549 392 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ENPP1P22413 925 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 PSMA3P25788 255 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TPP2P29144 1249 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 MC4RP32245 332 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 LBX1P52954 281 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 RPL11P62913 178 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 DUSP4Q13115 394 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 HABP4Q5JVS0 413 aaKnown RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 KCNK18Q7Z418 384 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 BTBD6Q96KE9 485 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TRIM47Q96LD4 638 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 MFSD14AQ96MC6 490 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 UBL7Q96S82 380 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 HDAC8Q9BY41 377 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 DUSP13Q9UII6 198 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TPCN1Q9ULQ1 816 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 TIMM13Q9Y5L4 95 aaPredicted RBP2.97□□□□□ -1.93
MCF2-204ENST00000414978 ST14Q9Y5Y6 855 aa2.97□□□□□ -1.93
MCF2-204ENST00000414978 ANKRD36CQ5JPF3 1778 aa2.96□□□□□ -1.93
MCF2-204ENST00000414978 PRSS38A1L453 326 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PRAMEF22A3QJZ6 481 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 FAM227AF5H4B4 570 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 DHX16O60231 1041 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 DGKIO75912 1065 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 USP1O94782 785 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 NDST3O95803 873 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 U2AF1L5P0DN76 240 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 JUPP14923 745 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RAD52P43351 418 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 NR1H2P55055 460 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 INHBEP58166 350 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RAC1P63000 192 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 U2AF1Q01081 240 aaKnown RBP eCLIP2.96□□□□□ -1.94
MCF2-204ENST00000414978 KCNAB2Q13303 367 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 LSAMPQ13449 338 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RTP2Q5QGT7 225 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PRAMEF18Q5VWM3 479 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 KIF18BQ86Y91 864 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 CREBRFQ8IUR6 639 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 HERC6Q8IVU3 1022 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 FMR1NBQ8N0W7 255 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 NRG4Q8WWG1 115 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 GOLGA1Q92805 767 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 COA7Q96BR5 231 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SLC26A6Q9BXS9 759 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 MCOLN1Q9GZU1 580 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 CD248Q9HCU0 757 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 ATP13A1Q9HD20 1204 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 ST6GALNAC1Q9NSC7 600 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ANKEF1Q9NU02 776 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 LRRFIP2Q9Y608 721 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 SNED1Q8TER0 1413 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PALLDQ8WX93 1383 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 WDR33Q9C0J8 1336 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 F5H0A9 414 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 MGEA5O60502 916 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PTPN1P18031 435 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 SLC7A1P30825 629 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 NOP2P46087 812 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 SLC9A5Q14940 896 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 TBC1D10BQ4KMP7 808 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 SPATA1Q5VX52 437 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 HIBCHQ6NVY1 386 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 Q6ZNB5 142 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 NAT8LQ8N9F0 302 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SH3RF2Q8TEC5 729 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PPIL4Q8WUA2 492 aaKnown RBP eCLIP2.96□□□□□ -1.94
MCF2-204ENST00000414978 LRTOMTQ8WZ04 291 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 TRIM11Q96F44 468 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 STK31Q9BXU1 1019 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 ACE2Q9BYF1 805 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 EPS8L2Q9H6S3 715 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 ZNF277Q9NRM2 450 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 CCNL1Q9UK58 526 aaPredicted RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 ECM29Q5VYK3 1845 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 CASP8AP2Q9UKL3 1982 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RIC1Q4ADV7 1423 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 EDC4Q6P2E9 1401 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 CAPN8A6NHC0 703 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 FAM90A27PA6NNH2 459 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RASA4BC9J798 803 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 RASA4O43374 803 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 GFPT2O94808 682 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 GSNP06396 782 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 CYP7A1P22680 504 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 TDO2P48775 406 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 PCBP3P57721 371 aaKnown RBP2.96□□□□□ -1.94
MCF2-204ENST00000414978 DCAF7P61962 342 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 EGR3Q06889 387 aa2.96□□□□□ -1.94
MCF2-204ENST00000414978 SPIRE1Q08AE8 756 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms