RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 GOLGA8SH3BPF8 625 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 PQBP1O60828 265 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 EIF4BP23588 611 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 TAF6P49848 677 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 PRKCZQ05513 592 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 KIAA0895Q8NCT3 520 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 COLEC11Q9BWP8 271 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 NIFKQ9BYG3 293 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 SEMA6BQ9H3T3 888 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM39AQ9NV64 488 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 USP34Q70CQ2 3546 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 A6NJR5 290 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 UCHL3P15374 230 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 NOP14P78316 857 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 NAA25Q14CX7 972 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 RNF187Q5TA31 235 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 MTHFD1LQ6UB35 978 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 CEP57Q86XR8 500 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 HAUS1Q96CS2 278 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 TMEM150BA6NC51 233 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 PEX10O60683 326 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 RHOXF2BP0C7M4 288 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 CD44P16070 742 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 GTF2BQ00403 316 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 MESDQ14696 234 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 SH2D4BQ5SQS7 431 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 GJC2Q5T442 439 aaPredicted RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 FOXR2Q6PJQ5 311 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 ANO5Q75V66 913 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 CBWD2Q8IUF1 395 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 WDR49Q8IV35 697 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 USP38Q8NB14 1042 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 DNAJC19Q96DA6 116 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 DDX27Q96GQ7 796 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 RHOXF2Q9BQY4 288 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 DDX20Q9UHI6 824 aaKnown RBP9.09□□□□□ -0.95
SYNE1-211ENST00000413186 PCDHA13Q9Y5I0 950 aa9.09□□□□□ -0.95
SYNE1-211ENST00000413186 SMIM35A0A1B0GVV1 85 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 TYW5A2RUC4 315 aaKnown RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GTPBP10A4D1E9 387 aaKnown RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 ZBTB39O15060 712 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GAS8O95995 478 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 HPDLQ96IR7 371 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 FAM204AQ9H8W3 233 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 A0A1W2PQJ5 194 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 MOXD2PA6NHM9 499 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 WNT7AO00755 349 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 BUB1O43683 1085 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 MYBL1P10243 752 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GLRA2P23416 452 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 CYP24A1Q07973 514 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 PTPN21Q16825 1174 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 ELMOD1Q8N336 334 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 DEFB118Q96PH6 123 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 ADAMTS5Q9UNA0 930 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 MAFBQ9Y5Q3 323 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 SOX10P56693 466 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 MRPS6P82932 125 aaKnown RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 ZNF792Q3KQV3 632 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 CDR2LQ86X02 465 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 DCP1BQ8IZD4 617 aaKnown RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 FUCA2Q9BTY2 467 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 SENP6Q9GZR1 1112 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 DPP3Q9NY33 737 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 CACNA1SQ13698 1873 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 SSU72P8A0A1W2PR75 194 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 KCNK3O14649 394 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 UPP2O95045 317 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 THP07101 528 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 SMPD1P17405 629 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GPC5P78333 572 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 MDM2Q00987 491 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA8FQ08AF8 430 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 GOLGA8DPQ0D2H9 430 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 VEPH1Q14D04 833 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 AFAP1L1Q8TED9 768 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 STMN2Q93045 179 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 NT5C1AQ9BXI3 368 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 CELF4Q9BZC1 486 aaKnown RBP9.08□□□□□ -0.96
SYNE1-211ENST00000413186 DONSONQ9NYP3 566 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 EHD2Q9NZN4 543 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 HDAC6Q9UBN7 1215 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 IKBKGQ9Y6K9 419 aa9.08□□□□□ -0.96
SYNE1-211ENST00000413186 SOWAHDA6NJG2 315 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 MAPK13O15264 365 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 PARNO95453 639 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 GHRP10912 638 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 CPB1P15086 417 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ATP2A2P16615 1042 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 CRYBB1P53674 252 aaPredicted RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 PTENP60484 403 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ELAVL2Q12926 359 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 ZBTB17Q13105 803 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 IRF5Q13568 498 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 MAPRE1Q15691 268 aaKnown RBP9.07□□□□□ -0.96
SYNE1-211ENST00000413186 GPAT2Q6NUI2 795 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 EP400NLQ6ZTU2 488 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 SCN4BQ8IWT1 228 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 FTHL17Q9BXU8 183 aa9.07□□□□□ -0.96
SYNE1-211ENST00000413186 TNFSF13BQ9Y275 285 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms