RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 VPS9D1Q9Y2B5 631 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 STON1Q9Y6Q2 735 aa13.54□□□□□ -0.24
COL6A3-206ENST00000409809 A0A0D9SFI3 127 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 FOXO3O43524 673 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 CAND2O75155 1236 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ITGA6P23229 1130 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 COG2Q14746 738 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PLGRKTQ9HBL7 147 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 MOV10Q9HCE1 1003 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 GPHNQ9NQX3 736 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 GRID1Q9ULK0 1009 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 IPPQ9Y573 584 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 B2RBV5 119 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SOX5P35711 763 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 HEATR6Q6AI08 1181 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 EIF1ADQ8N9N8 165 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 TMEM35BQ8NCS4 154 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 CLIC6Q96NY7 704 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ARHGEF3Q9NR81 526 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SORCS3Q9UPU3 1222 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 HBS1LQ9Y450 684 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 CDHR2Q9BYE9 1310 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 THRAP10827 490 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 CENPCQ03188 943 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 C11orf88Q6PI97 169 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 DBNDD2Q9BQY9 259 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 DAPK2Q9UIK4 370 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ZSCAN9O15535 394 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PLOD1Q02809 727 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 CCDC157Q569K6 752 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 IZUMO3Q5VZ72 239 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ERICH1Q86X53 443 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 WDR36Q8NI36 951 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 BDH2Q9BUT1 245 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 MYH3P11055 1940 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 RGS5O15539 181 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ZNF786Q8N393 782 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 KCTD17Q8N5Z5 321 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SLC7A3Q8WY07 619 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 USE1Q9NZ43 259 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 KLRF2D3W0D1 207 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PER1O15534 1290 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SLC34A1Q06495 639 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 FAM83BQ5T0W9 1011 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PPP1R18Q6NYC8 613 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 ABHD8Q96I13 439 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 AP3M1Q9Y2T2 418 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 WBP11Q9Y2W2 641 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PDS5AQ29RF7 1337 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 LRRC53A6NM62 1247 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SLC16A3O15427 465 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SEC24DO94855 1032 aaPredicted RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 HIBADHP31937 336 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 SLC18A3Q16572 532 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PARD3BQ8TEW8 1205 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 OTUD5Q96G74 571 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 PABPC3Q9H361 631 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 EFCAB1Q9HAE3 211 aa13.53□□□□□ -0.24
COL6A3-206ENST00000409809 A1CFQ9NQ94 594 aaKnown RBP13.53□□□□□ -0.24
COL6A3-206ENST00000409809 GCKRQ14397 625 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 PDZK1Q5T2W1 519 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 FRMD5Q7Z6J6 570 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 DENND6AQ8IWF6 608 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 TRIM51Q9BSJ1 452 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 RIC8BQ9NVN3 520 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 FIS1Q9Y3D6 152 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 IL2RBP14784 551 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 XKR9Q5GH70 373 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 SLC10A5Q5PT55 438 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 RCOR2Q8IZ40 523 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 IFNL3Q8IZI9 196 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 SLC8A2Q9UPR5 921 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 PHF20L1A8MW92 1017 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 IL12AP29459 219 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 AP3M2P53677 418 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 ITGA9Q13797 1035 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 ZMYM1Q5SVZ6 1142 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 CARD14Q9BXL6 1004 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 ADAM22Q9P0K1 906 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 SERPINB13Q9UIV8 391 aa13.52□□□□□ -0.24
COL6A3-206ENST00000409809 NIP7Q9Y221 180 aaKnown RBP eCLIP13.52□□□□□ -0.24
COL6A3-206ENST00000409809 TAF5LO75529 589 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 MYL2P10916 166 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 ATP1A3P13637 1013 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 PLCG1P19174 1290 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 XPAP23025 273 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 HADHAP40939 763 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 ARHGAP17Q68EM7 881 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 MZT2BQ6NZ67 158 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 FNIP1Q8TF40 1166 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 PDCD10Q9BUL8 212 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 C20orf96Q9NUD7 363 aaPredicted RBP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 ATP10AO60312 1499 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 CCT8P50990 548 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 TRIM25Q14258 630 aaKnown RBP13.52□□□□□ -0.25
COL6A3-206ENST00000409809 SDE2Q6IQ49 451 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 C1orf228Q6PIY5 440 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 ELMSAN1Q6PJG2 1045 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 LRRC74BQ6ZQY2 392 aa13.52□□□□□ -0.25
COL6A3-206ENST00000409809 FMR1NBQ8N0W7 255 aaPredicted RBP13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms