RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 NUP85Q9BW27 656 aa21.58■■□□□ 1.05
USP39-204ENST00000409766 VPS18Q9P253 973 aa21.58■■□□□ 1.05
USP39-204ENST00000409766 ADAM21Q9UKJ8 722 aa21.58■■□□□ 1.05
USP39-204ENST00000409766 TRPC6Q9Y210 931 aa21.58■■□□□ 1.05
USP39-204ENST00000409766 FAN1Q9Y2M0 1017 aa21.58■■□□□ 1.05
USP39-204ENST00000409766 PLXNA1Q9UIW2 1896 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 BHMG1C9JSJ3 638 aaPredicted RBP21.58■■□□□ 1.04
USP39-204ENST00000409766 HARSP12081 509 aaKnown RBP21.58■■□□□ 1.04
USP39-204ENST00000409766 UNGP13051 313 aaPredicted RBP21.58■■□□□ 1.04
USP39-204ENST00000409766 BPIFB4P59827 614 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 CUL2Q13617 745 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 MESDQ14696 234 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 TRADDQ15628 312 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 ARMCX2Q7L311 632 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 ZBTB8OSQ8IWT0 167 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 GPRC5AQ8NFJ5 357 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 ZNF564Q8TBZ8 553 aaPredicted RBP21.58■■□□□ 1.04
USP39-204ENST00000409766 JPH2Q9BR39 696 aaPredicted RBP21.58■■□□□ 1.04
USP39-204ENST00000409766 SLITRK6Q9H5Y7 841 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 UVRAGQ9P2Y5 699 aa21.58■■□□□ 1.04
USP39-204ENST00000409766 IQCA1LA6NCM1 817 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 ABLIM1O14639 778 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 PRKCBP05771 671 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 COMTP21964 271 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 GGCXP38435 758 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 TNFSF9P41273 254 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 MAPK6Q16659 721 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 EIF1ADQ8N9N8 165 aaKnown RBP21.57■■□□□ 1.04
USP39-204ENST00000409766 TRAPPC12Q8WVT3 735 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 ZSWIM1Q9BR11 485 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 C2orf40Q9H1Z8 148 aa21.57■■□□□ 1.04
USP39-204ENST00000409766 GOLGA6BA6NDN3 693 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 HBP1O60381 514 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 GRM1Q13255 1194 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 ZBTB33Q86T24 672 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 RHPN2Q8IUC4 686 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 UBL4BQ8N7F7 174 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 KRT35Q92764 455 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 CD101Q93033 1021 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 NAP1L3Q99457 506 aaPredicted RBP21.56■■□□□ 1.04
USP39-204ENST00000409766 TCHPQ9BT92 498 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 NR2E1Q9Y466 385 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 UNCXA6NJT0 531 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 TMEM110-MUSTN1A8MSY1 372 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 PHACTR2O75167 634 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 CLTAP09496 248 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 FAM153BP0C7A2 387 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 PEX5P50542 639 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 MCL1Q07820 350 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 ZNF211Q13398 564 aaPredicted RBP21.56■■□□□ 1.04
USP39-204ENST00000409766 ZNF792Q3KQV3 632 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 FAM153CQ494X1 144 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 PNMA8AQ86V59 439 aaPredicted RBP21.56■■□□□ 1.04
USP39-204ENST00000409766 TSEN2Q8NCE0 465 aaKnown RBP21.56■■□□□ 1.04
USP39-204ENST00000409766 AMACRQ9UHK6 382 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 FAM153AQ9UHL3 310 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 CNTN6Q9UQ52 1028 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 NUB1Q9Y5A7 615 aa21.56■■□□□ 1.04
USP39-204ENST00000409766 PLXNB2O15031 1838 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 OGTO15294 1046 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 AP3M2P53677 418 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 NOP14P78316 857 aaKnown RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 CCNA1P78396 465 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 POU5F1Q01860 360 aaKnown RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 ARHGAP1Q07960 439 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 NCOA4Q13772 614 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 CLUL1Q15846 466 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 ZNF771Q7L3S4 317 aaPredicted RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 WDR49Q8IV35 697 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.55■■□□□ 1.04
USP39-204ENST00000409766 MS4A4AQ96JQ5 239 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 WNT8AQ9H1J5 351 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 EVPLQ92817 2033 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 PDHXO00330 501 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 TBXAS1P24557 533 aaPredicted RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 MARCKSL1P49006 195 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 SCARA3Q6AZY7 606 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 TAPT1Q6NXT6 567 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 RIN2Q8WYP3 895 aaPredicted RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 BTBD6Q96KE9 485 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 RNPEPQ9H4A4 650 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 ERAP1Q9NZ08 941 aa21.55■■□□□ 1.04
USP39-204ENST00000409766 ZKSCAN7Q9P0L1 754 aaPredicted RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 CNOT8Q9UFF9 292 aaKnown RBP21.55■■□□□ 1.04
USP39-204ENST00000409766 RNF40O75150 1001 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CLSTN1O94985 981 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CYP1A1P04798 512 aaPredicted RBP21.54■■□□□ 1.04
USP39-204ENST00000409766 GJB1P08034 283 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 PROZP22891 400 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CYP2C19P33261 490 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CUL1Q13616 776 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 EFCAB12Q6NXP0 572 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 TSHZ1Q6ZSZ6 1077 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 MAATS1Q7Z4T9 603 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 MCOLN2Q8IZK6 566 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CCDC26Q8TAB7 109 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 EXOC4Q96A65 974 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 FZD8Q9H461 694 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 PTPRHQ9HD43 1115 aa21.54■■□□□ 1.04
USP39-204ENST00000409766 CPSF3Q9UKF6 684 aaKnown RBP21.54■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms