RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 PABPN1LA6NDY0 278 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 FOXN3O00409 490 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 ACKR2O00590 384 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PLEKP08567 350 aaPredicted RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 AMHR2Q16671 573 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 SH3D19Q5HYK7 790 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 NT5C1AQ9BXI3 368 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 VPS37BQ9H9H4 285 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PPANQ9NQ55 473 aaKnown RBP9.69□□□□□ -0.86
LIG4-202ENST00000405925 ZNF112Q9UJU3 913 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 PPME1Q9Y570 386 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 NHSQ6T4R5 1651 aa9.69□□□□□ -0.86
LIG4-202ENST00000405925 GOLGA6BA6NDN3 693 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MIF4GDA9UHW6 222 aaKnown RBP9.68□□□□□ -0.86
LIG4-202ENST00000405925 GLRA2P23416 452 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ATP11AP98196 1134 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 TRAPPC11Q7Z392 1133 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MAP4K3Q8IVH8 894 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 CTAGE3PQ8IX95 158 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ARFGAP2Q8N6H7 521 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 RABGGTAQ92696 567 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 RNF25Q96BH1 459 aaPredicted RBP9.68□□□□□ -0.86
LIG4-202ENST00000405925 C18orf8Q96DM3 657 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 DPP3Q9NY33 737 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 RNF14Q9UBS8 474 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 TRIM10Q9UDY6 481 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 SLC12A6Q9UHW9 1150 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ATP11BQ9Y2G3 1177 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 SYNGAP1Q96PV0 1343 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 IRS2Q9Y4H2 1338 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MYH3P11055 1940 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MCF2LO15068 1137 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 IVLP07476 585 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 KCNA2P16389 499 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 GTF2H1P32780 548 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ARL1P40616 181 aaPredicted RBP9.68□□□□□ -0.86
LIG4-202ENST00000405925 BFSP2Q13515 415 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MYBPC2Q14324 1141 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 KRT71Q3SY84 523 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 DUSP28Q4G0W2 176 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 MMS22LQ6ZRQ5 1243 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 TMC2Q8TDI7 906 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ATRIPQ8WXE1 791 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 SLC35C1Q96A29 364 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 PPP1R12CQ9BZL4 782 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 HDAC6Q9UBN7 1215 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 SSX2IPQ9Y2D8 614 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 UBR2Q8IWV8 1755 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 A0A1W2PQJ5 194 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 GJB1P08034 283 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 LCP1P13796 627 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 HSPA6P17066 643 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 TAF6P49848 677 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 CUL2Q13617 745 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ZPBP2Q6X784 338 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 CGRRF1Q99675 332 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 EPB41L5Q9HCM4 733 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 TXNRD2Q9NNW7 524 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 STAP1Q9ULZ2 295 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ABCA3Q99758 1704 aa9.68□□□□□ -0.86
LIG4-202ENST00000405925 ANO9A1A5B4 782 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ANKRD63C9JTQ0 380 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 FKTNO75072 461 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 RTN2O75298 545 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ORC1Q13415 861 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 BRD3Q15059 726 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 SV2CQ496J9 727 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 SPOPLQ6IQ16 392 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ABHD15Q6UXT9 468 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ELMO3Q96BJ8 720 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 WDR24Q96S15 920 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 SNTG2Q9NY99 539 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 CASZ1Q86V15 1759 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 CCDC66A2RUB6 948 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 TYW5A2RUC4 315 aaKnown RBP9.67□□□□□ -0.86
LIG4-202ENST00000405925 MYL6P60660 151 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 TRIP13Q15645 432 aaPredicted RBP9.67□□□□□ -0.86
LIG4-202ENST00000405925 ARL13BQ3SXY8 428 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ARSHQ5FYA8 562 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 GPAT2Q6NUI2 795 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 MTIF3Q9H2K0 278 aaKnown RBP9.67□□□□□ -0.86
LIG4-202ENST00000405925 PRDM10Q9NQV6 1147 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ASNSD1Q9NWL6 643 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 CHORDC1Q9UHD1 332 aaPredicted RBP9.67□□□□□ -0.86
LIG4-202ENST00000405925 TFR2Q9UP52 801 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 NRCAMQ92823 1304 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 A0A087X0T9 212 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 ECEL1O95672 775 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 FAM228BP0C875 321 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 KRT3P12035 628 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 AKAP5P24588 427 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 BRD2P25440 801 aaKnown RBP9.67□□□□□ -0.86
LIG4-202ENST00000405925 GTF2F1P35269 517 aaKnown RBP eCLIP9.67□□□□□ -0.862e-26■■■■■ 105.6
LIG4-202ENST00000405925 APBA1Q02410 837 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 DENND2CQ68D51 928 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 PLPPR4Q7Z2D5 763 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 TMEM161BQ8NDZ6 487 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 MAML3Q96JK9 1138 aa9.67□□□□□ -0.86
LIG4-202ENST00000405925 LBHD1Q9BQE6 289 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms