RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 GPC3P51654 580 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 SLC15A2Q16348 729 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 TRIM50Q86XT4 487 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 SEC16BQ96JE7 1060 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 BAZ2AQ9UIF9 1905 aaKnown RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 SYNJ2BP-COX16A0A087WUM0 186 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 A6NJR5 290 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 SPARCL1Q14515 664 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 FAM149B1Q96BN6 582 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 INPP4AQ96PE3 977 aaPredicted RBP19.7■□□□□ 0.74
USP48-204ENST00000400301 COX16Q9P0S2 106 aa19.7■□□□□ 0.74
USP48-204ENST00000400301 KIAA0391O15091 583 aaKnown RBP19.69■□□□□ 0.74
USP48-204ENST00000400301 MARSP56192 900 aaKnown RBP19.69■□□□□ 0.74
USP48-204ENST00000400301 SOX10P56693 466 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 PTENP60484 403 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 EAPPQ56P03 285 aaPredicted RBP19.69■□□□□ 0.74
USP48-204ENST00000400301 NLRP7Q8WX94 980 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 STRIP2Q9ULQ0 834 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 ARSEP51690 589 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 ARL4CP56559 192 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 NOP14P78316 857 aaKnown RBP19.69■□□□□ 0.74
USP48-204ENST00000400301 PCNX4Q63HM2 1172 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 C4orf19Q8IY42 314 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 PURBQ96QR8 312 aaKnown RBP19.69■□□□□ 0.74
USP48-204ENST00000400301 NUP188Q5SRE5 1749 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 IGKV6D-41A0A0C4DH26 115 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 TGFB1I1O43294 461 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 SV2AQ7L0J3 742 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 TEX2Q8IWB9 1127 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 ELMO3Q96BJ8 720 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 C17orf75Q9HAS0 396 aa19.69■□□□□ 0.74
USP48-204ENST00000400301 RPSAP08865 295 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 ACTR2P61160 394 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 FKBP1AP62942 108 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 XRRA1Q6P2D8 792 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 ZBED8Q8IZ13 594 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 ARHGAP24Q8N264 748 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 RDM1Q8NG50 284 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 ATG4AQ8WYN0 398 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 ATP2A3Q93084 1043 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 GPRASP2Q96D09 838 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 PIK3CDO00329 1044 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 EXTL3O43909 919 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 TATDN1Q6P1N9 297 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 APOBEC3FQ8IUX4 373 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 GBP7Q8N8V2 638 aaPredicted RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 TGS1Q96RS0 853 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 CHUKO15111 745 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 CLK2P49760 499 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 PDIA2Q13087 525 aaKnown RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 SPDYE2Q495Y8 402 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 SYDE1Q6ZW31 735 aaPredicted RBP19.68■□□□□ 0.74
USP48-204ENST00000400301 TTC13Q8NBP0 860 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 LRRC15Q8TF66 581 aa19.68■□□□□ 0.74
USP48-204ENST00000400301 TCP11X1B4DZS4 312 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 CAND2O75155 1236 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 KAT5Q92993 513 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 TTC25Q96NG3 672 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 RBM15Q96T37 977 aaKnown RBP eCLIP19.67■□□□□ 0.744e-7■■■□□ 17.5
USP48-204ENST00000400301 TAS2R14Q9NYV8 317 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 STAMBPO95630 424 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 RALAP11233 206 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 FNTAP49354 379 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 CYP26B1Q9NR63 512 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 LCMT1Q9UIC8 334 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 GGT7Q9UJ14 662 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 ITGA8P53708 1063 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 CXCL9Q07325 125 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 PPP3CAQ08209 521 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 TTMPQ5BVD1 217 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 LNX1Q8TBB1 728 aaPredicted RBP19.67■□□□□ 0.74
USP48-204ENST00000400301 SEPT10Q9P0V9 454 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 VAV3Q9UKW4 847 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 TTLL3Q9Y4R7 772 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 EFNA5P52803 228 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 DLG4P78352 724 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 P3H1Q32P28 736 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 ZNF449Q6P9G9 518 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 ZKSCAN4Q969J2 545 aaPredicted RBP19.67■□□□□ 0.74
USP48-204ENST00000400301 ADAM33Q9BZ11 813 aa19.67■□□□□ 0.74
USP48-204ENST00000400301 RANBP17Q9H2T7 1088 aaKnown RBP19.67■□□□□ 0.74
USP48-204ENST00000400301 LCA5LO95447 670 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 VCAM1P19320 739 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 RRM1P23921 792 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 TSNAXIP1Q2TAA8 658 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 SEZ6Q53EL9 994 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 SENP7Q9BQF6 1050 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 RBAK-RBAKDNI3L0D1 243 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 CAPN9O14815 690 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 CDH16O75309 829 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 SPAG7O75391 227 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 ZBED1O96006 694 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 KRT7P08729 469 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 GMPSP49915 693 aaPredicted RBP19.66■□□□□ 0.74
USP48-204ENST00000400301 ACTN3Q08043 901 aaPredicted RBP19.66■□□□□ 0.74
USP48-204ENST00000400301 NR1H3Q13133 447 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 BTNL9Q6UXG8 535 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 FAM83AQ86UY5 434 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 NME8Q8N427 588 aa19.66■□□□□ 0.74
USP48-204ENST00000400301 RBM46Q8TBY0 533 aaKnown RBP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms