RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 TRIM51Q9BSJ1 452 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 DHX35Q9H5Z1 703 aaKnown RBP10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 PLA2R1Q13018 1463 aa10.81□□□□□ -0.68
LIMCH1-203ENST00000396595 TMCC1O94876 653 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 IREB2P48200 963 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 IRAK1P51617 712 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 DEFA1P59665 94 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 DEFA3P59666 94 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 MED21Q13503 144 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 SLC10A5Q5PT55 438 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 NAIF1Q69YI7 327 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ST13P5Q8NFI4 369 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RBM15Q96T37 977 aaKnown RBP eCLIP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 TSSK1BQ9BXA7 367 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 POLR3FQ9H1D9 316 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 KLHL31Q9H511 634 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ZFATQ9P243 1243 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ZNF212Q9UDV6 495 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 SEPT3Q9UH03 358 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 AGO2Q9UKV8 859 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ARAP3Q8WWN8 1544 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 MYO3BQ8WXR4 1341 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM47DPA6NHR8 397 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 CYP26A1O43174 497 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ANGPT1Q15389 498 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 DUOXA2Q1HG44 320 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 EDRF1Q3B7T1 1238 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 TMEM154Q6P9G4 183 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 TRPM8Q7Z2W7 1104 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RTKN2Q8IZC4 609 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 SLC35G2Q8TBE7 412 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RNF217Q8TC41 542 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 TEX12Q9BXU0 123 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RNF146Q9NTX7 359 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RBM12Q9NTZ6 932 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 AGPAT5Q9NUQ2 364 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 CDC42BPGQ6DT37 1551 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 APOL1O14791 398 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 UCHL3P15374 230 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 PRAMEP78395 509 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 FASTKD1Q53R41 847 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ZC3H12BQ5HYM0 836 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 MASTLQ96GX5 879 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 NAF1Q96HR8 494 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 RAVER2Q9HCJ3 691 aaKnown RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 HOXC10Q9NYD6 342 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 PSMC3IPQ9P2W1 217 aaPredicted RBP10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ITGB1BP2Q9UKP3 347 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 PHF20L1A8MW92 1017 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 FDX1P10109 184 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 FOXO4P98177 505 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 LRRC8EQ6NSJ5 796 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 NYAP1Q6ZVC0 841 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 PODNQ7Z5L7 613 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 LUZP2Q86TE4 346 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ASZ1Q8WWH4 475 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 PBXIP1Q96AQ6 731 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 KCNK16Q96T55 309 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 SIKE1Q9BRV8 207 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 ABCF3Q9NUQ8 709 aa10.8□□□□□ -0.68
LIMCH1-203ENST00000396595 CNGA3Q16281 694 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ELOA2Q8IYF1 753 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 RAPGEF5Q92565 580 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 EML4Q9HC35 981 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 WDR35Q9P2L0 1181 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM66O15016 1216 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 FAM107AO95990 144 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 MAP4P27816 1152 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SERPINB9P50453 376 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 CACNB3P54284 484 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SWSAP1Q6NVH7 229 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 NOP9Q86U38 636 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 TRIM63Q969Q1 353 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 NARFQ9UHQ1 456 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 PNMA3Q9UL41 463 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 AP3B1O00203 1094 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 KDSRQ06136 332 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 NFX1Q12986 1120 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 INPP5AQ14642 412 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 TRADDQ15628 312 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 C1orf228Q6PIY5 440 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 LONP2Q86WA8 852 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SIX5Q8N196 739 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 RIBC1Q8N443 379 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 CYFIP2Q96F07 1278 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ISCUQ9H1K1 167 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SYBUQ9NX95 663 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ETAA1Q9NY74 926 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 CHMP2BQ9UQN3 213 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ABCA8O94911 1581 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ENO1P06733 434 aaKnown RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 SCARF1Q14162 830 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 CRYMQ14894 314 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 JAMLQ86YT9 394 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ANKMY2Q8IV38 441 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 IGDCC4Q8TDY8 1250 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 RIN2Q8WYP3 895 aaPredicted RBP10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 ZIM3Q96PE6 472 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 MRGBPQ9NV56 204 aa10.79□□□□□ -0.68
LIMCH1-203ENST00000396595 LMCD1Q9NZU5 365 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms