RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GADD45BO75293 160 aaPredicted RBP23.63■■□□□ 1.37
CLN3-207ENST00000395653 SOX4Q06945 474 aaPredicted RBP23.63■■□□□ 1.37
CLN3-207ENST00000395653 STK4Q13043 487 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 FUT10Q6P4F1 479 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 MRPL43Q8N983 215 aaKnown RBP23.63■■□□□ 1.37
CLN3-207ENST00000395653 PABPC5Q96DU9 382 aaKnown RBP23.63■■□□□ 1.37
CLN3-207ENST00000395653 CBWD1Q9BRT8 395 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 HERC2P3Q9BVR0 1158 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 THEGQ9P2T0 379 aa23.63■■□□□ 1.37
CLN3-207ENST00000395653 FSD2A1L4K1 749 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 HIDE1A8MVS5 230 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 LACTBL1A8MY62 500 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 TADA2AO75478 443 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 RHOBTB3O94955 611 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 KIF4AO95239 1232 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 SNRPFP62306 86 aaKnown RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 KCNB1Q14721 858 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 UPP1Q16831 310 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 ARMCX5Q6P1M9 558 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 CRELD2Q6UXH1 353 aaPredicted RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 KIAA0895Q8NCT3 520 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 RABGGTAQ92696 567 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 HLA-CQ95604 372 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 DDX27Q96GQ7 796 aaKnown RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 CDCA3Q99618 268 aaPredicted RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 ASB7Q9H672 318 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 TLE6Q9H808 572 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 GOLGA2P5Q9HBQ8 144 aa23.62■■□□□ 1.37
CLN3-207ENST00000395653 SPTBN5Q9NRC6 3674 aaKnown RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 PDCD11Q14690 1871 aaKnown RBP23.62■■□□□ 1.37
CLN3-207ENST00000395653 SF3B1O75533 1304 aaKnown RBP eCLIP23.62■■□□□ 1.373e-9■■■■■ 164.7
CLN3-207ENST00000395653 C2orf71A6NGG8 1288 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 TGFB1I1O43294 461 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 NRIP1P48552 1158 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 CLCNKBP51801 687 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 ZBTB6Q15916 424 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 DCLRE1AQ6PJP8 1040 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 KIF12Q96FN5 646 aa23.61■■□□□ 1.37
CLN3-207ENST00000395653 CGNQ9P2M7 1197 aaKnown RBP23.61■■□□□ 1.37
CLN3-207ENST00000395653 UBQLN1Q9UMX0 589 aaKnown RBP23.61■■□□□ 1.37
CLN3-207ENST00000395653 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 XPOTO43592 962 aaKnown RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 EXTL3O43909 919 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 CXCL14O95715 111 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 CYP3A5P20815 502 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 RPL9P32969 192 aaKnown RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 PTPN14Q15678 1187 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 DUSP6Q16828 381 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 KNOP1Q1ED39 458 aaKnown RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 CTC1Q2NKJ3 1217 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 CLEC17AQ6ZS10 378 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 RBM23Q86U06 439 aaKnown RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 PHF6Q8IWS0 365 aaKnown RBP eCLIP23.6■■□□□ 1.37
CLN3-207ENST00000395653 NELFCDQ8IXH7 590 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 ELOA2Q8IYF1 753 aaPredicted RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 EFHBQ8N7U6 833 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 C18orf25Q96B23 403 aaPredicted RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 SAAL1Q96ER3 474 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 FAM213AQ9BRX8 229 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 GPR62Q9BZJ7 368 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 UBE2ZQ9H832 354 aaPredicted RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 HOOK1Q9UJC3 728 aaKnown RBP23.6■■□□□ 1.37
CLN3-207ENST00000395653 SSX2IPQ9Y2D8 614 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 DERAQ9Y315 318 aa23.6■■□□□ 1.37
CLN3-207ENST00000395653 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.59■■□□□ 1.37
CLN3-207ENST00000395653 B3GAT3O94766 335 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 URODP06132 367 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 GTF2F1P35269 517 aaKnown RBP eCLIP23.59■■□□□ 1.37
CLN3-207ENST00000395653 UBE2HP62256 183 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 SPAG1Q07617 926 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 ELAVL2Q12926 359 aaKnown RBP23.59■■□□□ 1.37
CLN3-207ENST00000395653 HS2ST1Q7LGA3 356 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 GPR65Q8IYL9 337 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 GPD1LQ8N335 351 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 FAM212AQ96EL1 285 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 PCIF1Q9H4Z3 704 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 IGFLR1Q9H665 355 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 MRPL17Q9NRX2 175 aaKnown RBP23.59■■□□□ 1.37
CLN3-207ENST00000395653 AGPAT3Q9NRZ7 376 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 CHST7Q9NS84 486 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 TUBGCP4Q9UGJ1 667 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 XIRP2A4UGR9 3374 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 PODXLO00592 558 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 KINO60870 393 aaKnown RBP23.59■■□□□ 1.37
CLN3-207ENST00000395653 LILRB3O75022 631 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 IL18RAPO95256 599 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 CA8P35219 290 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 GLUD2P49448 558 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 DSG1Q02413 1049 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 PNOCQ13519 176 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 USP41Q3LFD5 358 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 JADE1Q6IE81 842 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 TAS1R1Q7RTX1 841 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 BRSK2Q8IWQ3 736 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 ZSWIM2Q8NEG5 633 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 HASPINQ8TF76 798 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 ATXN2LQ8WWM7 1075 aaKnown RBP23.59■■□□□ 1.37
CLN3-207ENST00000395653 AUTS2Q8WXX7 1259 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 CLDND1Q9NY35 253 aa23.59■■□□□ 1.37
CLN3-207ENST00000395653 C2CD2Q9Y426 696 aa23.59■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms