RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 TRPM3Q9HCF6 1732 aaPredicted RBP17.14■□□□□ 0.33
PCDH1-203ENST00000394536 ATP6V1G2O95670 118 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 SRGAP2CP0DJJ0 459 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 RFX6Q8HWS3 928 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 RASGEF1CQ8N431 466 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 ZSWIM2Q8NEG5 633 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 TMEM143Q96AN5 459 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 GJD4Q96KN9 370 aaPredicted RBP17.14■□□□□ 0.33
PCDH1-203ENST00000394536 TAAR1Q96RJ0 339 aa17.14■□□□□ 0.33
PCDH1-203ENST00000394536 TRIM6Q9C030 488 aaPredicted RBP17.14■□□□□ 0.33
PCDH1-203ENST00000394536 H7C0C1 242 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 ATP5OP48047 213 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 RARRES1P49788 294 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 ACAD10Q6JQN1 1059 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 FAM81BQ96LP2 452 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 ROPN1BQ9BZX4 212 aaPredicted RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 ROPN1Q9HAT0 212 aaPredicted RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 MAD1L1Q9Y6D9 718 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 CFAP69A5D8W1 941 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 PSMD10O75832 226 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TJP3O95049 919 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 MT-ND3P03897 115 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 INHBAP08476 426 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TMEM191BP0C7N4 346 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TARSP26639 723 aaKnown RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 FNTAP49354 379 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 COPS2P61201 443 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 NOP14P78316 857 aaKnown RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 PPATQ06203 517 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TTC27Q6P3X3 843 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 FOXR2Q6PJQ5 311 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 PCDHB18PQ96TA0 734 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 RIT2Q99578 217 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 NAALADL1Q9UQQ1 740 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TJP1Q07157 1748 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TTC4O95801 387 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 GZMAP12544 262 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 NQO1P15559 274 aaKnown RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 POLD1P28340 1107 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 ELF3P78545 371 aaPredicted RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 SMAD1Q15797 465 aaKnown RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 EXOC3L1Q86VI1 746 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 GPD1LQ8N335 351 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 PICK1Q9NRD5 415 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 GEMIN8Q9NWZ8 242 aaKnown RBP17.13■□□□□ 0.33
PCDH1-203ENST00000394536 KCND2Q9NZV8 630 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 TMEM59LQ9UK28 342 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 FEM1BQ9UK73 627 aa17.13■□□□□ 0.33
PCDH1-203ENST00000394536 FAM47DPA6NHR8 397 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 ANKRD63C9JTQ0 380 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 RAD23BP54727 409 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 THNSL1Q8IYQ7 743 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 YIPF3Q9GZM5 350 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 HERC5Q9UII4 1024 aaKnown RBP17.12■□□□□ 0.33
PCDH1-203ENST00000394536 TBX20Q9UMR3 447 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 TRIM33Q9UPN9 1127 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 PHRF1Q9P1Y6 1649 aaKnown RBP17.12■□□□□ 0.33
PCDH1-203ENST00000394536 CHKAP35790 457 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 JAM2P57087 298 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 RPS6P62753 249 aaKnown RBP17.12■□□□□ 0.33
PCDH1-203ENST00000394536 SPP2Q13103 211 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 HADHQ16836 314 aaKnown RBP17.12■□□□□ 0.33
PCDH1-203ENST00000394536 DCAF12L1Q5VU92 463 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 ERICH1Q86X53 443 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 NUDCD1Q96RS6 583 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 TMEM8AQ9HCN3 771 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 NPHS2Q9NP85 383 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 EDIL3O43854 480 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 RNF8O76064 485 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 VCAM1P19320 739 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 NPTX2P47972 431 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 OVGP1Q12889 678 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 SMTNL2Q2TAL5 461 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 GNPTABQ3T906 1256 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 C11orf63Q6NUN7 778 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 SERPINB12Q96P63 405 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 P2RX7Q99572 595 aaKnown RBP17.12■□□□□ 0.33
PCDH1-203ENST00000394536 HAO1Q9UJM8 370 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 PNMA3Q9UL41 463 aa17.12■□□□□ 0.33
PCDH1-203ENST00000394536 LAMB4A4D0S4 1761 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 MARK3P27448 753 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CAV1Q03135 178 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 STAT4Q14765 748 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CNGA2Q16280 664 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 SWT1Q5T5J6 900 aaKnown RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 C15orf52Q6ZUT6 534 aaKnown RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CFAP61Q8NHU2 1237 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 HSPH1Q92598 858 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PPP1R16BQ96T49 567 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 ZNF277Q9NRM2 450 aaPredicted RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 RBAKQ9NYW8 714 aaPredicted RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 AGO2Q9UKV8 859 aaKnown RBP17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PCDHB2Q9Y5E7 798 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 PCDHA10Q9Y5I2 948 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 NUP98P52948 1817 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 I3L4J1 428 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 GH1P01241 217 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 HLA-DRAP01903 254 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 CIITAP33076 1130 aa17.11■□□□□ 0.33
PCDH1-203ENST00000394536 BAATQ14032 418 aaPredicted RBP17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms