RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 TLDC2A0PJX2 215 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 MEIS1O00470 390 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 NR3C2P08235 984 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 ATP6V1C1P21283 382 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 CALB2P22676 271 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 ZNF76P36508 570 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 NPEPPSP55786 919 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 SLC29A2Q14542 456 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 ARHGEF16Q5VV41 709 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 KRT79Q5XKE5 535 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 TAOK1Q7L7X3 1001 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 APBB1IPQ7Z5R6 666 aaPredicted RBP11.9□□□□□ -0.5
CUX1-204ENST00000393824 SYCE1Q8N0S2 351 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 FITM2Q8N6M3 262 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 FAM133AQ8N9E0 248 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 GPRC5AQ8NFJ5 357 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 TEKT4Q8WW24 435 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 DDX12PQ92771 950 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 HES6Q96HZ4 224 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 RAB3IPQ96QF0 476 aaPredicted RBP11.9□□□□□ -0.5
CUX1-204ENST00000393824 TRIM7Q9C029 511 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 KCNH7Q9NS40 1196 aa11.9□□□□□ -0.5
CUX1-204ENST00000393824 DOCK3Q8IZD9 2030 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 FAM187AA6NFU0 413 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MANSC4A6NHS7 340 aaPredicted RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 EML1O00423 815 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 SORBS3O60504 671 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 CTGFP29279 349 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MAGEA8P43361 318 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PTK2Q05397 1052 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 CRHR2Q13324 411 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PARP6Q2NL67 630 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 TMEM63BQ5T3F8 832 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PCNX4Q63HM2 1172 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MFSD5Q6N075 450 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PPP4R3CPQ6ZMV5 832 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 EEPD1Q7L9B9 569 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 IRF2BP2Q7Z5L9 587 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 NT5DC3Q86UY8 548 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PARK7Q99497 189 aaKnown RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 TRIM51Q9BSJ1 452 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 GANQ9H2C0 597 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 RNPEPL1Q9HAU8 725 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 BMP2KQ9NSY1 1161 aaPredicted RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 RGL1Q9NZL6 768 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 GGT7Q9UJ14 662 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 NAGPAQ9UK23 515 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 VAV3Q9UKW4 847 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 INTUQ9ULD6 942 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 DIS3Q9Y2L1 958 aaKnown RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.89□□□□□ -0.51
CUX1-204ENST00000393824 DNAJC25-GNG10A0A024R161 153 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 UNC5CO95185 931 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 FAM163BP0C2L3 166 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 IFNAR2P48551 515 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MXRA7P84157 204 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 CCDC15Q0P6D6 951 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 TAF1CQ15572 869 aaPredicted RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 TKFCQ3LXA3 575 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MOXD1Q6UVY6 613 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 DYMQ7RTS9 669 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 KCNK18Q7Z418 384 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 VSIG10LQ86VR7 867 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 MXRA8Q9BRK3 442 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 NENFQ9UMX5 172 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 PCDHA12Q9UN75 941 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 DAAM1Q9Y4D1 1078 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 UBIAD1Q9Y5Z9 338 aa11.89□□□□□ -0.51
CUX1-204ENST00000393824 RBBP6Q7Z6E9 1792 aaKnown RBP11.89□□□□□ -0.51
CUX1-204ENST00000393824 DDX39AO00148 427 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 SETSIPP0DME0 302 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 BCRP11274 1271 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ARID5AQ03989 594 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 FAM26FQ5R3K3 315 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 HYIQ5T013 277 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 RNF43Q68DV7 783 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ALKBH5Q6P6C2 394 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 ZDHHC24Q6UX98 284 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ZNF571Q7Z3V5 609 aaPredicted RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 DAAM2Q86T65 1068 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 DNAJC19Q96DA6 116 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 SYT15Q9BQS2 421 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 FGFR1OP2Q9NVK5 253 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 WDR35Q9P2L0 1181 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 MORF4L1Q9UBU8 362 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 TCP11X1B4DZS4 312 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 MAFGO15525 162 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 DHX15O43143 795 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 CHMP2AO43633 222 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 FGGP02679 453 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ACADSP16219 412 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 ALDH3A1P30838 453 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 PRKCIP41743 596 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 APLP1P51693 650 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 DR1Q01658 176 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 SP2Q02086 613 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 COASYQ13057 564 aa11.88□□□□□ -0.51
CUX1-204ENST00000393824 AUHQ13825 339 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 DHX34Q14147 1143 aaKnown RBP11.88□□□□□ -0.51
CUX1-204ENST00000393824 EDRF1Q3B7T1 1238 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms