RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TAF3Q5VWG9 929 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 WDR93Q6P2C0 686 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 MTHFD1LQ6UB35 978 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 PEX26Q7Z412 305 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 DAAM2Q86T65 1068 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 OR5B17Q8NGF7 314 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 ZBTB10Q96DT7 871 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 PBKQ96KB5 322 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 PCDHB18PQ96TA0 734 aa27.08■■□□□ 1.93
SHOX2-201ENST00000389589 ZRANB2O95218 330 aaKnown RBP eCLIP27.07■■□□□ 1.92
SHOX2-201ENST00000389589 GPC5P78333 572 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 TNFAIP2Q03169 654 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 ZNF677Q86XU0 584 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 IFT122Q9HBG6 1241 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 AKT3Q9Y243 479 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 MMEP08473 750 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 HOXC6P09630 235 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 C2orf54Q08AI8 447 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 PPFIA1Q13136 1202 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 CUL2Q13617 745 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 NCOA4Q13772 614 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 RGMBQ6NW40 437 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 DDX1Q92499 740 aaKnown RBP27.07■■□□□ 1.92
SHOX2-201ENST00000389589 ARHGEF26Q96DR7 871 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 IMPG2Q9BZV3 1241 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 PACSIN2Q9UNF0 486 aaPredicted RBP27.07■■□□□ 1.92
SHOX2-201ENST00000389589 STXBP5LQ9Y2K9 1186 aa27.07■■□□□ 1.92
SHOX2-201ENST00000389589 INHBEP58166 350 aa27.06■■□□□ 1.92
SHOX2-201ENST00000389589 MINDY3Q9H8M7 445 aa27.06■■□□□ 1.92
SHOX2-201ENST00000389589 OSGEPQ9NPF4 335 aa27.06■■□□□ 1.92
SHOX2-201ENST00000389589 PCDHB2Q9Y5E7 798 aa27.06■■□□□ 1.92
SHOX2-201ENST00000389589 DUOXA2Q1HG44 320 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 ZNF668Q96K58 619 aaPredicted RBP27.05■■□□□ 1.92
SHOX2-201ENST00000389589 AMFRQ9UKV5 643 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 B4GALT5O43286 388 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 ZEB2O60315 1214 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 CLTAP09496 248 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 NOP14P78316 857 aaKnown RBP27.05■■□□□ 1.92
SHOX2-201ENST00000389589 GRIK4Q16099 956 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 NT5DC3Q86UY8 548 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 ELMO3Q96BJ8 720 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 SELENOOQ9BVL4 669 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 ABCB6Q9NP58 842 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 ACP6Q9NPH0 428 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 OGFRQ9NZT2 677 aa27.05■■□□□ 1.92
SHOX2-201ENST00000389589 A0A087WZ62 844 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 BUB1BO60566 1050 aaPredicted RBP27.04■■□□□ 1.92
SHOX2-201ENST00000389589 SMYD5Q6GMV2 418 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 SAPCD2Q86UD0 394 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 ARID3AQ99856 593 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 FDXACB1Q9BRP7 624 aaPredicted RBP27.04■■□□□ 1.92
SHOX2-201ENST00000389589 APOBEC3GQ9HC16 384 aaKnown RBP27.04■■□□□ 1.92
SHOX2-201ENST00000389589 MGAMO43451 1857 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 RRN3P2A6NIE6 340 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 KCNK3O14649 394 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 DNA2P51530 1060 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 SPOPLQ6IQ16 392 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 C17orf99Q6UX52 265 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 UBE2Q2Q8WVN8 375 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 RUBCNQ92622 972 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 CDT1Q9H211 546 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 GOLPH3Q9H4A6 298 aa27.04■■□□□ 1.92
SHOX2-201ENST00000389589 B4GALT4O60513 344 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 IL18RAPO95256 599 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 VSNL1P62760 191 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 POU5F1Q01860 360 aaKnown RBP27.03■■□□□ 1.92
SHOX2-201ENST00000389589 EEF1DP3Q658K8 133 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 IFNL1Q8IU54 200 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 THNSL1Q8IYQ7 743 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 FAM212AQ96EL1 285 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 HES6Q96HZ4 224 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 MS4A14Q96JA4 679 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 CTTNBP2NLQ9P2B4 639 aa27.03■■□□□ 1.92
SHOX2-201ENST00000389589 A6NJR5 290 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 IQCF3P0C7M6 154 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 MCF2P10911 925 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 ACO1P21399 889 aaKnown RBP27.02■■□□□ 1.92
SHOX2-201ENST00000389589 ACAD10Q6JQN1 1059 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 CNTN6Q9UQ52 1028 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 ADCY6O43306 1168 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 MTA2O94776 668 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 ASS1P00966 412 aaKnown RBP27.02■■□□□ 1.92
SHOX2-201ENST00000389589 SLC10A3P09131 477 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 AMHR2Q16671 573 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 KYAT1Q16773 422 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 USP6NLQ92738 828 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 MTMR12Q9C0I1 747 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 RPF1Q9H9Y2 349 aaKnown RBP27.02■■□□□ 1.92
SHOX2-201ENST00000389589 EHD2Q9NZN4 543 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 GNEQ9Y223 722 aaKnown RBP27.02■■□□□ 1.92
SHOX2-201ENST00000389589 NUB1Q9Y5A7 615 aa27.02■■□□□ 1.92
SHOX2-201ENST00000389589 SEC31AO94979 1220 aaKnown RBP27.01■■□□□ 1.91
SHOX2-201ENST00000389589 VTNP04004 478 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 CLEC16AQ2KHT3 1053 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 MARCH8Q5T0T0 291 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 C11orf63Q6NUN7 778 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 ZNF410Q86VK4 478 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 GTF3C4Q9UKN8 822 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 COG5Q9UP83 839 aa27.01■■□□□ 1.91
SHOX2-201ENST00000389589 PCDHB4Q9Y5E5 795 aa27.01■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms